Results 81 - 85 of 85 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5692 | 5' | -58.4 | NC_001806.1 | + | 101489 | 0.7 | 0.60436 |
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Target: 5'- cGGGACuGGAGC-CCGCCGUuuacgGGGUa- -3' miRNA: 3'- uCUCUGuCCUUGcGGCGGCA-----CCCAgg -5' |
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| 5692 | 5' | -58.4 | NC_001806.1 | + | 99689 | 0.7 | 0.614329 |
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Target: 5'- uGGGGGCAuGGGACGCCGgaCCcUGGGgaggaCCg -3' miRNA: 3'- -UCUCUGU-CCUUGCGGC--GGcACCCa----GG- -5' |
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| 5692 | 5' | -58.4 | NC_001806.1 | + | 21757 | 0.7 | 0.624311 |
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Target: 5'- cGAGGCGcGG---GCCGUCGggcgGGGUCCg -3' miRNA: 3'- uCUCUGU-CCuugCGGCGGCa---CCCAGG- -5' |
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| 5692 | 5' | -58.4 | NC_001806.1 | + | 28669 | 0.7 | 0.6333 |
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Target: 5'- gGGGGugGGGAGgagccgccCGCCauauuugggggacGCCGUGGGaCCc -3' miRNA: 3'- -UCUCugUCCUU--------GCGG-------------CGGCACCCaGG- -5' |
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| 5692 | 5' | -58.4 | NC_001806.1 | + | 14392 | 0.68 | 0.703736 |
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Target: 5'- aGGGGACAcuGGGGCGUgCGUUaagGGGUCCg -3' miRNA: 3'- -UCUCUGU--CCUUGCG-GCGGca-CCCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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