miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5694 3' -57.6 NC_001806.1 + 65290 0.66 0.852696
Target:  5'- cGggGAGgagGAGGGggGCCCCCaaggGCCu- -3'
miRNA:   3'- -CuuCUUgaaCUCCCa-CGGGGG----CGGcu -5'
5694 3' -57.6 NC_001806.1 + 131485 0.66 0.844804
Target:  5'- -cGGAACgcaccGAGGGgccaaguugGCCCCCGgacCCGGg -3'
miRNA:   3'- cuUCUUGaa---CUCCCa--------CGGGGGC---GGCU- -5'
5694 3' -57.6 NC_001806.1 + 20728 0.66 0.836721
Target:  5'- gGggGGGCg-GGGGGccggcgGCCUCCGCUGc -3'
miRNA:   3'- -CuuCUUGaaCUCCCa-----CGGGGGCGGCu -5'
5694 3' -57.6 NC_001806.1 + 14088 0.66 0.820012
Target:  5'- --cGGugUUGuuGGGUGCCCuCCGCa-- -3'
miRNA:   3'- cuuCUugAACu-CCCACGGG-GGCGgcu -5'
5694 3' -57.6 NC_001806.1 + 5673 0.66 0.820012
Target:  5'- cGAGGGCggGuGGGUccGCgCCCCGCCc- -3'
miRNA:   3'- cUUCUUGaaCuCCCA--CG-GGGGCGGcu -5'
5694 3' -57.6 NC_001806.1 + 3349 0.67 0.811401
Target:  5'- cGggGGGCUgGcGGGccggGCCCCgGCCa- -3'
miRNA:   3'- -CuuCUUGAaCuCCCa---CGGGGgCGGcu -5'
5694 3' -57.6 NC_001806.1 + 39207 0.67 0.811401
Target:  5'- --cGuuCUUGGGGGccgGgCCCCGCCGc -3'
miRNA:   3'- cuuCuuGAACUCCCa--CgGGGGCGGCu -5'
5694 3' -57.6 NC_001806.1 + 29131 0.67 0.80263
Target:  5'- gGggGGGCggucucggGGGGGaGCCCCCcCCGc -3'
miRNA:   3'- -CuuCUUGaa------CUCCCaCGGGGGcGGCu -5'
5694 3' -57.6 NC_001806.1 + 118893 0.67 0.793707
Target:  5'- --cGGAUgcggUGGGGGagcuucugGCCCCCGUCGu -3'
miRNA:   3'- cuuCUUGa---ACUCCCa-------CGGGGGCGGCu -5'
5694 3' -57.6 NC_001806.1 + 113287 0.67 0.766108
Target:  5'- -uGGAGCUgccgGGGGGggacguuCCCCCgGCCGGc -3'
miRNA:   3'- cuUCUUGAa---CUCCCac-----GGGGG-CGGCU- -5'
5694 3' -57.6 NC_001806.1 + 23945 0.67 0.766108
Target:  5'- -cGGGGCcUGGGGGgGCCgccggaguggUCCGCCGAg -3'
miRNA:   3'- cuUCUUGaACUCCCaCGG----------GGGCGGCU- -5'
5694 3' -57.6 NC_001806.1 + 113410 0.68 0.750942
Target:  5'- -uGGAGC-UGGGGGUgggacgccacgccauGgCCCCCGCCa- -3'
miRNA:   3'- cuUCUUGaACUCCCA---------------C-GGGGGCGGcu -5'
5694 3' -57.6 NC_001806.1 + 57647 0.68 0.747107
Target:  5'- -cGGggUUUG-GGG-GCCCCC-CCGGa -3'
miRNA:   3'- cuUCuuGAACuCCCaCGGGGGcGGCU- -5'
5694 3' -57.6 NC_001806.1 + 62798 0.68 0.717883
Target:  5'- --uGAACagGGGGGcaaaGCCCUCGCUGAc -3'
miRNA:   3'- cuuCUUGaaCUCCCa---CGGGGGCGGCU- -5'
5694 3' -57.6 NC_001806.1 + 151233 0.68 0.71492
Target:  5'- gGggGggUggGAGGGgucaGCCCCgccccccgggcccaCGCCGGg -3'
miRNA:   3'- -CuuCuuGaaCUCCCa---CGGGG--------------GCGGCU- -5'
5694 3' -57.6 NC_001806.1 + 128989 0.69 0.698023
Target:  5'- gGggGGAUUUGGccgaauGGGUGCCCCgGguucacCCGAa -3'
miRNA:   3'- -CuuCUUGAACU------CCCACGGGGgC------GGCU- -5'
5694 3' -57.6 NC_001806.1 + 144814 0.69 0.667846
Target:  5'- -cGGGAC--GAGGG-GCCCCCGaCCGc -3'
miRNA:   3'- cuUCUUGaaCUCCCaCGGGGGC-GGCu -5'
5694 3' -57.6 NC_001806.1 + 76142 0.69 0.667846
Target:  5'- gGAAG-ACUUGGGGGgcgugccgGCCCUgCGCCa- -3'
miRNA:   3'- -CUUCuUGAACUCCCa-------CGGGG-GCGGcu -5'
5694 3' -57.6 NC_001806.1 + 134240 0.71 0.556608
Target:  5'- -cGGAGCggGGGGGcgGCCCCggcaGCCGGa -3'
miRNA:   3'- cuUCUUGaaCUCCCa-CGGGGg---CGGCU- -5'
5694 3' -57.6 NC_001806.1 + 103492 0.73 0.469665
Target:  5'- cGGGGGCUguUGucGGGUgGCUCCCGCCGGa -3'
miRNA:   3'- cUUCUUGA--ACu-CCCA-CGGGGGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.