miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5694 5' -62.7 NC_001806.1 + 4284 0.66 0.616453
Target:  5'- cCGCCGGGGCugC-CCgGcCGUGaaGCGg -3'
miRNA:   3'- -GCGGCCUCGugGcGGgC-GUACgaCGU- -5'
5694 5' -62.7 NC_001806.1 + 5873 0.66 0.615467
Target:  5'- aCGCCGGgaccaacgggacGGCgggcggcccaaggGCCGCCCGCcuUGCcGCc -3'
miRNA:   3'- -GCGGCC------------UCG-------------UGGCGGGCGu-ACGaCGu -5'
5694 5' -62.7 NC_001806.1 + 78174 0.66 0.613494
Target:  5'- gCGCCuGAccccgcauccagacGC-CCGCauCCGCGUGCUGCc -3'
miRNA:   3'- -GCGGcCU--------------CGuGGCG--GGCGUACGACGu -5'
5694 5' -62.7 NC_001806.1 + 119193 0.66 0.606596
Target:  5'- cCGCCGcccCGCCGgCCGCGaaggagGCUGCGg -3'
miRNA:   3'- -GCGGCcucGUGGCgGGCGUa-----CGACGU- -5'
5694 5' -62.7 NC_001806.1 + 73457 0.66 0.605611
Target:  5'- gGCCGGGGUggccggcccggccGCCGCCC---UGCUGgAg -3'
miRNA:   3'- gCGGCCUCG-------------UGGCGGGcguACGACgU- -5'
5694 5' -62.7 NC_001806.1 + 20146 0.66 0.60069
Target:  5'- gCGCCGGAGagacccgcccccCGCCGCCCgggcccgcccccgggGCcgGC-GCGg -3'
miRNA:   3'- -GCGGCCUC------------GUGGCGGG---------------CGuaCGaCGU- -5'
5694 5' -62.7 NC_001806.1 + 81060 0.66 0.596757
Target:  5'- cCGCCGG-GCGCUGCUucaucacagcgaCGCcGUGCUGa- -3'
miRNA:   3'- -GCGGCCuCGUGGCGG------------GCG-UACGACgu -5'
5694 5' -62.7 NC_001806.1 + 21899 0.66 0.596757
Target:  5'- gGCCGcaucGAGCGCCGCCgGgCccGCgcgGCGg -3'
miRNA:   3'- gCGGC----CUCGUGGCGGgC-GuaCGa--CGU- -5'
5694 5' -62.7 NC_001806.1 + 102986 0.66 0.596757
Target:  5'- cCGCCGGcuCAUC-CCCGCGcGCgGCAu -3'
miRNA:   3'- -GCGGCCucGUGGcGGGCGUaCGaCGU- -5'
5694 5' -62.7 NC_001806.1 + 131994 0.66 0.596757
Target:  5'- gGCCGGuGGCcCUGUUCGCcccGCUGCGu -3'
miRNA:   3'- gCGGCC-UCGuGGCGGGCGua-CGACGU- -5'
5694 5' -62.7 NC_001806.1 + 32982 0.66 0.586942
Target:  5'- cCGCCGGGGCcccgggccggGCCGCCacggggGCcgGCcguugGCGg -3'
miRNA:   3'- -GCGGCCUCG----------UGGCGGg-----CGuaCGa----CGU- -5'
5694 5' -62.7 NC_001806.1 + 24810 0.66 0.586942
Target:  5'- uGCCGccGGCGCCGCCCGgGauucGCUGg- -3'
miRNA:   3'- gCGGCc-UCGUGGCGGGCgUa---CGACgu -5'
5694 5' -62.7 NC_001806.1 + 122719 0.66 0.577158
Target:  5'- aCGCUGaGGCACCacGUCCGCcgGCgcGCAc -3'
miRNA:   3'- -GCGGCcUCGUGG--CGGGCGuaCGa-CGU- -5'
5694 5' -62.7 NC_001806.1 + 78788 0.66 0.577158
Target:  5'- gGCCGGA-CGCCGCCuugCGCgAUGCcGUg -3'
miRNA:   3'- gCGGCCUcGUGGCGG---GCG-UACGaCGu -5'
5694 5' -62.7 NC_001806.1 + 24132 0.66 0.571304
Target:  5'- uCGCCGGGGCcguggaguuucugggGCUGCUCGCcaGCgccgGCGa -3'
miRNA:   3'- -GCGGCCUCG---------------UGGCGGGCGuaCGa---CGU- -5'
5694 5' -62.7 NC_001806.1 + 27700 0.66 0.56741
Target:  5'- -cCCGGGGCACCGa-CGCAggccaagccccUGUUGCGu -3'
miRNA:   3'- gcGGCCUCGUGGCggGCGU-----------ACGACGU- -5'
5694 5' -62.7 NC_001806.1 + 3287 0.66 0.56741
Target:  5'- aGgCGGGGCG-CGUCgGCGUGCgGCGg -3'
miRNA:   3'- gCgGCCUCGUgGCGGgCGUACGaCGU- -5'
5694 5' -62.7 NC_001806.1 + 96374 0.66 0.557704
Target:  5'- gCGCCaGGGCGCC-CCCGCGcgGggGCGc -3'
miRNA:   3'- -GCGGcCUCGUGGcGGGCGUa-CgaCGU- -5'
5694 5' -62.7 NC_001806.1 + 101333 0.66 0.557704
Target:  5'- -cCCGGGGCAUCGgCUGCcAUGCgcGCAc -3'
miRNA:   3'- gcGGCCUCGUGGCgGGCG-UACGa-CGU- -5'
5694 5' -62.7 NC_001806.1 + 99848 0.66 0.553835
Target:  5'- ---gGGGGCGCUgguccgaGCCCGCAugugcgccaguuccUGCUGCAg -3'
miRNA:   3'- gcggCCUCGUGG-------CGGGCGU--------------ACGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.