miRNA display CGI


Results 21 - 40 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5695 3' -57.9 NC_001806.1 + 48966 0.67 0.767496
Target:  5'- gCCCCGUcgcuCCCGUCcauucccaucgcgAGGGG-GUCCGGc- -3'
miRNA:   3'- -GGGGCG----GGGCAG-------------UCCCCuUAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 45500 0.67 0.759057
Target:  5'- aCCCGCCCUGUguGGGGu-------- -3'
miRNA:   3'- gGGGCGGGGCAguCCCCuuagguuuu -5'
5695 3' -57.9 NC_001806.1 + 5575 0.67 0.757169
Target:  5'- aCCCCGCCCCGacgccggcacgcCGGGGGc--CCGu-- -3'
miRNA:   3'- -GGGGCGGGGCa-----------GUCCCCuuaGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 38126 0.68 0.749575
Target:  5'- cCCCCGUgCUGcUCGGGGGAG--CAAGAc -3'
miRNA:   3'- -GGGGCGgGGC-AGUCCCCUUagGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 79160 0.68 0.746711
Target:  5'- cUCCC-UCCUGUCGGGGGAgcuauucccggggcAUCCGGu- -3'
miRNA:   3'- -GGGGcGGGGCAGUCCCCU--------------UAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 144320 0.68 0.739993
Target:  5'- cCCCCG-CCCGUguGGGu-AUCCGGc- -3'
miRNA:   3'- -GGGGCgGGGCAguCCCcuUAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 30584 0.68 0.73032
Target:  5'- cCCUCGCgCCGgCAGGGG---CCAAGAg -3'
miRNA:   3'- -GGGGCGgGGCaGUCCCCuuaGGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 30274 0.68 0.73032
Target:  5'- cCCCgCGCCCCGgccccCGGGGcGGAgCCGGc- -3'
miRNA:   3'- -GGG-GCGGGGCa----GUCCC-CUUaGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 38403 0.68 0.73032
Target:  5'- uCUCCGCCggcUCGGGGGggUCCu--- -3'
miRNA:   3'- -GGGGCGGggcAGUCCCCuuAGGuuuu -5'
5695 3' -57.9 NC_001806.1 + 28438 0.68 0.73032
Target:  5'- -gUCGCCCUGUUGGGGGucgCCAu-- -3'
miRNA:   3'- ggGGCGGGGCAGUCCCCuuaGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 147675 0.68 0.728375
Target:  5'- gCUCCGCCCCGggggccggggcgCGGGGGcgggccCCGGAGg -3'
miRNA:   3'- -GGGGCGGGGCa-----------GUCCCCuua---GGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 2174 0.68 0.720563
Target:  5'- gCCCagCGCCgacaCGUCGGGGGcgccGGUCCAAu- -3'
miRNA:   3'- -GGG--GCGGg---GCAGUCCCC----UUAGGUUuu -5'
5695 3' -57.9 NC_001806.1 + 132568 0.68 0.710732
Target:  5'- aCCCGUCCCGUacuuugccgucCuGGGGuuUCCGGGu -3'
miRNA:   3'- gGGGCGGGGCA-----------GuCCCCuuAGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 91423 0.68 0.700836
Target:  5'- aCCgCGCCCCucGUCGGcGGAAcCCAGGAa -3'
miRNA:   3'- -GGgGCGGGG--CAGUCcCCUUaGGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 93903 0.69 0.690883
Target:  5'- -gCCGCCCCGaagaGGGGGAccCCGGGg -3'
miRNA:   3'- ggGGCGGGGCag--UCCCCUuaGGUUUu -5'
5695 3' -57.9 NC_001806.1 + 7787 0.69 0.690883
Target:  5'- cCCCCGcCCCCGgcuaCAGGGG---CCAu-- -3'
miRNA:   3'- -GGGGC-GGGGCa---GUCCCCuuaGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 149230 0.69 0.677875
Target:  5'- cUCCCGCCCUccagacgcaccggaGUCGGGGGuc-CCAc-- -3'
miRNA:   3'- -GGGGCGGGG--------------CAGUCCCCuuaGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 137238 0.69 0.670843
Target:  5'- gCCUGCCCC-UCAGGGaGuuUCCGu-- -3'
miRNA:   3'- gGGGCGGGGcAGUCCC-CuuAGGUuuu -5'
5695 3' -57.9 NC_001806.1 + 44237 0.7 0.620347
Target:  5'- uUUgGUCCCGUgaaaguugucCGGGGGGAUCCAAGGa -3'
miRNA:   3'- gGGgCGGGGCA----------GUCCCCUUAGGUUUU- -5'
5695 3' -57.9 NC_001806.1 + 51010 0.7 0.610243
Target:  5'- cCCCCGcCCCCGUaAGcGGcGggUCCGu-- -3'
miRNA:   3'- -GGGGC-GGGGCAgUC-CC-CuuAGGUuuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.