Results 41 - 60 of 108 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5695 | 5' | -63 | NC_001806.1 | + | 151274 | 0.76 | 0.170409 |
Target: 5'- cGGgcggUGGGGGCCggggCCGGggGGCGGc -3' miRNA: 3'- -CCaa--ACCCCCGGggg-GGCCuuCCGCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 16860 | 0.77 | 0.15484 |
Target: 5'- aGGUUUGGGGGUCUCC---GggGGCGGg -3' miRNA: 3'- -CCAAACCCCCGGGGGggcCuuCCGCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 151431 | 0.77 | 0.151154 |
Target: 5'- ----cGGGGGCCCaCCggCGGggGGCGGc -3' miRNA: 3'- ccaaaCCCCCGGG-GGg-GCCuuCCGCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 20709 | 0.78 | 0.12443 |
Target: 5'- cGUUcggGGuGGGCCCgCCgGGggGGCGGg -3' miRNA: 3'- cCAAa--CC-CCCGGGgGGgCCuuCCGCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 17161 | 0.82 | 0.068391 |
Target: 5'- cGGUcgcuccaaGGGCCCCCCCgGGAAGGCGGg -3' miRNA: 3'- -CCAaacc----CCCGGGGGGG-CCUUCCGCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 86045 | 0.74 | 0.241241 |
Target: 5'- cGGg--GGGGGCgggcucgUCCCCUGGGGcGGCGGc -3' miRNA: 3'- -CCaaaCCCCCG-------GGGGGGCCUU-CCGCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 72512 | 0.74 | 0.243999 |
Target: 5'- cGGgccugGGGGaGCCcugcgucggcgugggCCCCCGGGAGGgGGu -3' miRNA: 3'- -CCaaa--CCCC-CGG---------------GGGGGCCUUCCgCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 55304 | 0.71 | 0.334281 |
Target: 5'- aGG-UUGGGGGCgcugUcguacaccaggaguCCCCCGGGugGGGCGGu -3' miRNA: 3'- -CCaAACCCCCG----G--------------GGGGGCCU--UCCGCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 147698 | 0.72 | 0.315516 |
Target: 5'- ----cGGGGGCgggCCCCGGA-GGCGGc -3' miRNA: 3'- ccaaaCCCCCGgg-GGGGCCUuCCGCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 149676 | 0.72 | 0.315516 |
Target: 5'- ---gUGGGGGUCCCCCaacauGGCGGc -3' miRNA: 3'- ccaaACCCCCGGGGGGgccuuCCGCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 55701 | 0.72 | 0.295612 |
Target: 5'- gGGUcgaugUGGGGGUgaCCUCCGGGcuGGCGGc -3' miRNA: 3'- -CCAa----ACCCCCGg-GGGGGCCUu-CCGCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 108721 | 0.73 | 0.289198 |
Target: 5'- ----cGGGGGagaucaCCCCCCCGGGGacGGCGa -3' miRNA: 3'- ccaaaCCCCC------GGGGGGGCCUU--CCGCc -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 150716 | 0.73 | 0.289198 |
Target: 5'- ----aGGcGGCCCgCCCUGuGAGGGCGGg -3' miRNA: 3'- ccaaaCCcCCGGG-GGGGC-CUUCCGCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 45307 | 0.73 | 0.282894 |
Target: 5'- ----cGGGGaGCCgCCCggcgaGGAGGGCGGg -3' miRNA: 3'- ccaaaCCCC-CGGgGGGg----CCUUCCGCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 29179 | 0.73 | 0.282894 |
Target: 5'- aGUUgcgGGGGcGCCCCCCCucgagaGGAcGGgGGg -3' miRNA: 3'- cCAAa--CCCC-CGGGGGGG------CCUuCCgCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 21290 | 0.73 | 0.282894 |
Target: 5'- cGGgacgGGaGGGCCCCCgCGGcGGGCa- -3' miRNA: 3'- -CCaaa-CC-CCCGGGGGgGCCuUCCGcc -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 18505 | 0.73 | 0.282894 |
Target: 5'- aGGgcUGGGaGCCCUCCUGGggGGUc- -3' miRNA: 3'- -CCaaACCCcCGGGGGGGCCuuCCGcc -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 147776 | 0.73 | 0.276699 |
Target: 5'- cGGacgcgGGGGGCCCggggCGGggGGCGGa -3' miRNA: 3'- -CCaaa--CCCCCGGGggg-GCCuuCCGCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 29974 | 0.73 | 0.270612 |
Target: 5'- cGGg--GGGcgucuGGCCCCUCCGGggGGguUGGg -3' miRNA: 3'- -CCaaaCCC-----CCGGGGGGGCCuuCC--GCC- -5' |
|||||||
5695 | 5' | -63 | NC_001806.1 | + | 28695 | 0.73 | 0.258183 |
Target: 5'- -aUUUGGGGGacgccgugggaCCCCCgacuccggugcguCUGGAGGGCGGg -3' miRNA: 3'- ccAAACCCCC-----------GGGGG-------------GGCCUUCCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home