miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5698 3' -56.3 NC_001806.1 + 151692 0.66 0.905259
Target:  5'- gGCCGGgGGggcCCGGG-CUGcccGCCg -3'
miRNA:   3'- -UGGCCgCCaaaGGCCCuGAUua-CGGa -5'
5698 3' -56.3 NC_001806.1 + 34401 0.69 0.760366
Target:  5'- -gCGGCGGUggCCGGGcCgg--GCCg -3'
miRNA:   3'- ugGCCGCCAaaGGCCCuGauuaCGGa -5'
5698 3' -56.3 NC_001806.1 + 144552 0.69 0.760366
Target:  5'- cGCgGGUGGUgcgaaagacuUUCCGGGcGCguccgGGUGCCg -3'
miRNA:   3'- -UGgCCGCCA----------AAGGCCC-UGa----UUACGGa -5'
5698 3' -56.3 NC_001806.1 + 127266 0.68 0.779166
Target:  5'- cACCGGCGGacccCCGGaGGCgccUGCCc -3'
miRNA:   3'- -UGGCCGCCaaa-GGCC-CUGauuACGGa -5'
5698 3' -56.3 NC_001806.1 + 24133 0.68 0.787458
Target:  5'- cGCCGGgGccguggaGUUUCUGGGGCUGcucGCCa -3'
miRNA:   3'- -UGGCCgC-------CAAAGGCCCUGAUua-CGGa -5'
5698 3' -56.3 NC_001806.1 + 107038 0.68 0.788372
Target:  5'- cGCCcGCGGgg-CCGcGGGCU-GUGCCg -3'
miRNA:   3'- -UGGcCGCCaaaGGC-CCUGAuUACGGa -5'
5698 3' -56.3 NC_001806.1 + 54489 0.68 0.805471
Target:  5'- cGCuCGGUGGggUCCcugggugGGGGCUGGugacUGCCg -3'
miRNA:   3'- -UG-GCCGCCaaAGG-------CCCUGAUU----ACGGa -5'
5698 3' -56.3 NC_001806.1 + 50665 0.68 0.823709
Target:  5'- cACCGGCG----CCGGGACgacgcgGcgGCCa -3'
miRNA:   3'- -UGGCCGCcaaaGGCCCUGa-----UuaCGGa -5'
5698 3' -56.3 NC_001806.1 + 24303 0.68 0.823709
Target:  5'- gGCCGGCGGcg--CGGGACcugcGCCg -3'
miRNA:   3'- -UGGCCGCCaaagGCCCUGauuaCGGa -5'
5698 3' -56.3 NC_001806.1 + 85754 0.69 0.741113
Target:  5'- aGCCGcGCGGccacgucgUCCGGGG--GGUGCCa -3'
miRNA:   3'- -UGGC-CGCCaa------AGGCCCUgaUUACGGa -5'
5698 3' -56.3 NC_001806.1 + 22867 0.69 0.741113
Target:  5'- gACCuGGCGGccgucCCGGGGCUG--GCCg -3'
miRNA:   3'- -UGG-CCGCCaaa--GGCCCUGAUuaCGGa -5'
5698 3' -56.3 NC_001806.1 + 2946 0.69 0.731339
Target:  5'- gGCCGGgcCGGg--CCGGGACUcuUGCgCUu -3'
miRNA:   3'- -UGGCC--GCCaaaGGCCCUGAuuACG-GA- -5'
5698 3' -56.3 NC_001806.1 + 113381 0.81 0.193991
Target:  5'- uCCGGCGGcgUUCCGGGACgcccgggGCCUg -3'
miRNA:   3'- uGGCCGCCa-AAGGCCCUGauua---CGGA- -5'
5698 3' -56.3 NC_001806.1 + 149817 0.73 0.519536
Target:  5'- gGCCGGCGGguacucgcUCCGGGGCggg-GCUc -3'
miRNA:   3'- -UGGCCGCCaa------AGGCCCUGauuaCGGa -5'
5698 3' -56.3 NC_001806.1 + 101478 0.71 0.620147
Target:  5'- aACCGcCGGg--CCGGGACUGGaGCCc -3'
miRNA:   3'- -UGGCcGCCaaaGGCCCUGAUUaCGGa -5'
5698 3' -56.3 NC_001806.1 + 4817 0.71 0.650825
Target:  5'- --aGGCGGgggUCCGGGGCggcgagGCCg -3'
miRNA:   3'- uggCCGCCaa-AGGCCCUGauua--CGGa -5'
5698 3' -56.3 NC_001806.1 + 84881 0.7 0.671215
Target:  5'- gGCCGGCGGgacUCUGGGcgUGGUGCg- -3'
miRNA:   3'- -UGGCCGCCaa-AGGCCCugAUUACGga -5'
5698 3' -56.3 NC_001806.1 + 33982 0.7 0.691478
Target:  5'- gGCCGGgGGUcgCCGGGGCaGggGCg- -3'
miRNA:   3'- -UGGCCgCCAaaGGCCCUGaUuaCGga -5'
5698 3' -56.3 NC_001806.1 + 151303 0.7 0.691478
Target:  5'- -gCGGCGGUgggCCGGGccuCUGGcGCCg -3'
miRNA:   3'- ugGCCGCCAaa-GGCCCu--GAUUaCGGa -5'
5698 3' -56.3 NC_001806.1 + 100516 0.7 0.691478
Target:  5'- aGCCgGGCGGUaugUCCGuGGACUccGggGCCc -3'
miRNA:   3'- -UGG-CCGCCAa--AGGC-CCUGA--UuaCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.