miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5698 5' -48.7 NC_001806.1 + 116000 0.66 0.998455
Target:  5'- ------gGUUggUCGCCCGucucugcuacGCCGCUg -3'
miRNA:   3'- uuuuauaUAGuuAGCGGGC----------UGGCGGg -5'
5698 5' -48.7 NC_001806.1 + 27363 0.66 0.998455
Target:  5'- --------cCAAUgGgCCgGGCCGCCCa -3'
miRNA:   3'- uuuuauauaGUUAgC-GGgCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 341 0.66 0.998455
Target:  5'- ------------cCGCCCGgaccGCCGCCCg -3'
miRNA:   3'- uuuuauauaguuaGCGGGC----UGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 146583 0.66 0.998455
Target:  5'- --------cCAG-CGCCCGACCcCCCc -3'
miRNA:   3'- uuuuauauaGUUaGCGGGCUGGcGGG- -5'
5698 5' -48.7 NC_001806.1 + 67173 0.66 0.998102
Target:  5'- ------cAUCAGcuggccccaggccUCGCCCaGCCGCUCg -3'
miRNA:   3'- uuuuauaUAGUU-------------AGCGGGcUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 54467 0.66 0.998102
Target:  5'- -------cUCGAUCGCCuCGaucaccuGCCGCUCg -3'
miRNA:   3'- uuuuauauAGUUAGCGG-GC-------UGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 75419 0.67 0.997764
Target:  5'- -----uUGUCGuccaggugCGCCgGGCCGCCa -3'
miRNA:   3'- uuuuauAUAGUua------GCGGgCUGGCGGg -5'
5698 5' -48.7 NC_001806.1 + 39157 0.67 0.997764
Target:  5'- --------gCAGaCGCCCGACaGCCCc -3'
miRNA:   3'- uuuuauauaGUUaGCGGGCUGgCGGG- -5'
5698 5' -48.7 NC_001806.1 + 7232 0.67 0.997764
Target:  5'- ------cAUCugaagcCGUCCGACCGCCa -3'
miRNA:   3'- uuuuauaUAGuua---GCGGGCUGGCGGg -5'
5698 5' -48.7 NC_001806.1 + 107080 0.67 0.997332
Target:  5'- -uAAUGUGUCAGUCuuggauCCC-ACgGCCCg -3'
miRNA:   3'- uuUUAUAUAGUUAGc-----GGGcUGgCGGG- -5'
5698 5' -48.7 NC_001806.1 + 118756 0.67 0.997332
Target:  5'- ---------gAAUCcCCUGGCCGCCCu -3'
miRNA:   3'- uuuuauauagUUAGcGGGCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 90880 0.67 0.996833
Target:  5'- cGAAAcGUGgacgCcGUgGCCCGcgcgGCCGCCCa -3'
miRNA:   3'- -UUUUaUAUa---GuUAgCGGGC----UGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 107841 0.67 0.996833
Target:  5'- ------cGUCGA-CGUCCGA-CGCCCa -3'
miRNA:   3'- uuuuauaUAGUUaGCGGGCUgGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 80248 0.67 0.996497
Target:  5'- gGAGGgcgGUGUUg--CGCCCGgaggcccgguuucccGCCGCCCc -3'
miRNA:   3'- -UUUUa--UAUAGuuaGCGGGC---------------UGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 46436 0.67 0.995601
Target:  5'- ------gGUCGggCGCCUGGCgGCCa -3'
miRNA:   3'- uuuuauaUAGUuaGCGGGCUGgCGGg -5'
5698 5' -48.7 NC_001806.1 + 49255 0.67 0.995601
Target:  5'- gGAGAUGgcgggCGAcgagcCGCCCGugCGCCg -3'
miRNA:   3'- -UUUUAUaua--GUUa----GCGGGCugGCGGg -5'
5698 5' -48.7 NC_001806.1 + 116826 0.67 0.995601
Target:  5'- ----aGUGUCAcgCGggaGGCCGCCCa -3'
miRNA:   3'- uuuuaUAUAGUuaGCgggCUGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 148287 0.67 0.995601
Target:  5'- -----------cUCGCCCGcCCGCCUa -3'
miRNA:   3'- uuuuauauaguuAGCGGGCuGGCGGG- -5'
5698 5' -48.7 NC_001806.1 + 133215 0.68 0.994852
Target:  5'- cGGGGUG-AUCGAggaCGCCCGGCgGgCCa -3'
miRNA:   3'- -UUUUAUaUAGUUa--GCGGGCUGgCgGG- -5'
5698 5' -48.7 NC_001806.1 + 85280 0.68 0.994852
Target:  5'- ------gGUCGuGUUGgCCGACCGCCa -3'
miRNA:   3'- uuuuauaUAGU-UAGCgGGCUGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.