miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5699 3' -52.8 NC_001806.1 + 130714 0.66 0.971942
Target:  5'- gGGCGUCAUccccacgaucaacGUCccGGAGaGCuGGAGCUCg -3'
miRNA:   3'- aUUGCGGUA-------------UAGa-CCUC-CG-CCUUGAG- -5'
5699 3' -52.8 NC_001806.1 + 15376 0.66 0.969251
Target:  5'- gGACGaCCGgugGUCUGGAGuuGGggUUg -3'
miRNA:   3'- aUUGC-GGUa--UAGACCUCcgCCuuGAg -5'
5699 3' -52.8 NC_001806.1 + 140480 0.66 0.969251
Target:  5'- aUGACGUUAUcUCggUGGAGGCGcauuGGCUCg -3'
miRNA:   3'- -AUUGCGGUAuAG--ACCUCCGCc---UUGAG- -5'
5699 3' -52.8 NC_001806.1 + 20554 0.66 0.969251
Target:  5'- aGAUGCCAUGc---GGGGCGGGGCg- -3'
miRNA:   3'- aUUGCGGUAUagacCUCCGCCUUGag -5'
5699 3' -52.8 NC_001806.1 + 43279 0.66 0.969251
Target:  5'- ---gGCCGUuccgccCUcGGAGGCGGAGC-Cg -3'
miRNA:   3'- auugCGGUAua----GA-CCUCCGCCUUGaG- -5'
5699 3' -52.8 NC_001806.1 + 130206 0.66 0.968314
Target:  5'- gUGACGCgucggcaugcgacaCGUcgCUGG-GGCGGGGgUCg -3'
miRNA:   3'- -AUUGCG--------------GUAuaGACCuCCGCCUUgAG- -5'
5699 3' -52.8 NC_001806.1 + 133681 0.66 0.96605
Target:  5'- cGGCGCgucgugCGUGUCUgucccGGAGGCGGGGagUCg -3'
miRNA:   3'- aUUGCG------GUAUAGA-----CCUCCGCCUUg-AG- -5'
5699 3' -52.8 NC_001806.1 + 107140 0.66 0.96605
Target:  5'- gGugGCCGagauUCUGGAGcGCGaacaGAGCUUg -3'
miRNA:   3'- aUugCGGUau--AGACCUC-CGC----CUUGAG- -5'
5699 3' -52.8 NC_001806.1 + 48292 0.66 0.965383
Target:  5'- cGACGCCcccgaa-GAGGCGGGGCUg -3'
miRNA:   3'- aUUGCGGuauagacCUCCGCCUUGAg -5'
5699 3' -52.8 NC_001806.1 + 25696 0.66 0.962622
Target:  5'- -uGCGCCGggguacGUCUGGAGgaGCGGGAg-- -3'
miRNA:   3'- auUGCGGUa-----UAGACCUC--CGCCUUgag -5'
5699 3' -52.8 NC_001806.1 + 147693 0.66 0.962622
Target:  5'- gGGCGCgGgggCgggccccGGAGGCGGcGCUCg -3'
miRNA:   3'- aUUGCGgUauaGa------CCUCCGCCuUGAG- -5'
5699 3' -52.8 NC_001806.1 + 78945 0.66 0.958961
Target:  5'- --cCGCCGUGUCUGGugcucGUGGAcauCUCc -3'
miRNA:   3'- auuGCGGUAUAGACCuc---CGCCUu--GAG- -5'
5699 3' -52.8 NC_001806.1 + 26701 0.66 0.958961
Target:  5'- cGGCGUgGgcccgGGGGGCGGGGCUg -3'
miRNA:   3'- aUUGCGgUauagaCCUCCGCCUUGAg -5'
5699 3' -52.8 NC_001806.1 + 24290 0.66 0.958961
Target:  5'- -uGCGCCGUGcgCUGGccGGCGGcGCg- -3'
miRNA:   3'- auUGCGGUAUa-GACCu-CCGCCuUGag -5'
5699 3' -52.8 NC_001806.1 + 31351 0.67 0.95506
Target:  5'- gGACGCCccccGUGUUuguggGGAGGgGGGGgUCg -3'
miRNA:   3'- aUUGCGG----UAUAGa----CCUCCgCCUUgAG- -5'
5699 3' -52.8 NC_001806.1 + 9759 0.67 0.95506
Target:  5'- gGGCGCCGUGggUUGGGGGCgcguggggaGGGGCc- -3'
miRNA:   3'- aUUGCGGUAUa-GACCUCCG---------CCUUGag -5'
5699 3' -52.8 NC_001806.1 + 73353 0.67 0.95506
Target:  5'- --uCGCCGUAUCcGGccucuccgGGGCugcuGGAGCUCu -3'
miRNA:   3'- auuGCGGUAUAGaCC--------UCCG----CCUUGAG- -5'
5699 3' -52.8 NC_001806.1 + 5648 0.67 0.95506
Target:  5'- -cGCGCCA--UCUGccauGGGCGGGGCg- -3'
miRNA:   3'- auUGCGGUauAGACc---UCCGCCUUGag -5'
5699 3' -52.8 NC_001806.1 + 15767 0.67 0.946522
Target:  5'- aGGCGCgAU-UCUGGAuGCGGGgaaaACUCg -3'
miRNA:   3'- aUUGCGgUAuAGACCUcCGCCU----UGAG- -5'
5699 3' -52.8 NC_001806.1 + 119557 0.67 0.941878
Target:  5'- gGGCGCCA----UGGGGGCGGcuGACg- -3'
miRNA:   3'- aUUGCGGUauagACCUCCGCC--UUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.