miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5701 3' -56.7 NC_001806.1 + 115450 0.66 0.902102
Target:  5'- aCGU--CGGCCGACaucGCCGCCa--- -3'
miRNA:   3'- -GCAuuGCCGGCUGaauCGGCGGccac -5'
5701 3' -56.7 NC_001806.1 + 32680 0.7 0.70893
Target:  5'- aGUGGCguGGCCGAcCUUAGCCuCUGGg- -3'
miRNA:   3'- gCAUUG--CCGGCU-GAAUCGGcGGCCac -5'
5701 3' -56.7 NC_001806.1 + 127688 0.7 0.70893
Target:  5'- cCGUAcCGGUCGAgcUGGCCGCCGu-- -3'
miRNA:   3'- -GCAUuGCCGGCUgaAUCGGCGGCcac -5'
5701 3' -56.7 NC_001806.1 + 66812 0.69 0.728558
Target:  5'- aCGgccgAGCggGGCCGGCccgGGUgGCCGGUGu -3'
miRNA:   3'- -GCa---UUG--CCGGCUGaa-UCGgCGGCCAC- -5'
5701 3' -56.7 NC_001806.1 + 98066 0.69 0.728558
Target:  5'- aCGUGAUGGCCGuCUccacguGCgUGCCGGUc -3'
miRNA:   3'- -GCAUUGCCGGCuGAau----CG-GCGGCCAc -5'
5701 3' -56.7 NC_001806.1 + 58334 0.69 0.757367
Target:  5'- gCGuUGGCGGCCG-CcUGGcCCGCCuuGGUGa -3'
miRNA:   3'- -GC-AUUGCCGGCuGaAUC-GGCGG--CCAC- -5'
5701 3' -56.7 NC_001806.1 + 145714 0.69 0.757367
Target:  5'- aGUAcCGGCCcACcUGGCCGCgCGGg- -3'
miRNA:   3'- gCAUuGCCGGcUGaAUCGGCG-GCCac -5'
5701 3' -56.7 NC_001806.1 + 67212 0.69 0.757367
Target:  5'- ----cCGGCCuGGCggGGCgCGCUGGUGg -3'
miRNA:   3'- gcauuGCCGG-CUGaaUCG-GCGGCCAC- -5'
5701 3' -56.7 NC_001806.1 + 23934 0.68 0.773275
Target:  5'- ----cUGGCCGGCggcggggccugggggGGCCGCCGGa- -3'
miRNA:   3'- gcauuGCCGGCUGaa-------------UCGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 9176 0.7 0.70893
Target:  5'- --cAACGGCCGugUagcccgggGGUCGCgGGUGu -3'
miRNA:   3'- gcaUUGCCGGCugAa-------UCGGCGgCCAC- -5'
5701 3' -56.7 NC_001806.1 + 138788 0.7 0.699016
Target:  5'- gGUAAUGGCCGACgcaggcGCCcCCGGc- -3'
miRNA:   3'- gCAUUGCCGGCUGaau---CGGcGGCCac -5'
5701 3' -56.7 NC_001806.1 + 144964 0.7 0.699016
Target:  5'- cCGUGGCGGcCCGGCccggGGCC-CCGGc- -3'
miRNA:   3'- -GCAUUGCC-GGCUGaa--UCGGcGGCCac -5'
5701 3' -56.7 NC_001806.1 + 113270 0.75 0.42635
Target:  5'- uGUGGgggUGGCCGACguggAGCUGCCGGg- -3'
miRNA:   3'- gCAUU---GCCGGCUGaa--UCGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 4318 0.73 0.548283
Target:  5'- gCGUcGCGGCCGGCcaccGCCGCgCGGg- -3'
miRNA:   3'- -GCAuUGCCGGCUGaau-CGGCG-GCCac -5'
5701 3' -56.7 NC_001806.1 + 3865 0.73 0.548283
Target:  5'- gGgcACGGCCcGCgccacGCUGCCGGUGa -3'
miRNA:   3'- gCauUGCCGGcUGaau--CGGCGGCCAC- -5'
5701 3' -56.7 NC_001806.1 + 134951 0.71 0.613382
Target:  5'- gGUGGCGGCCGACcccucaucgucGGCCGucgcggcggccaucCCGGUGc -3'
miRNA:   3'- gCAUUGCCGGCUGaa---------UCGGC--------------GGCCAC- -5'
5701 3' -56.7 NC_001806.1 + 75255 0.71 0.628556
Target:  5'- gGUGACGGCCcugGGCgcGGCCGCCa--- -3'
miRNA:   3'- gCAUUGCCGG---CUGaaUCGGCGGccac -5'
5701 3' -56.7 NC_001806.1 + 147666 0.71 0.638678
Target:  5'- --gGGCGGCCGGCUccGCC-CCGGg- -3'
miRNA:   3'- gcaUUGCCGGCUGAauCGGcGGCCac -5'
5701 3' -56.7 NC_001806.1 + 2665 0.71 0.658897
Target:  5'- --cGGCGGCCG-CgggcGCCGCCGuGUGg -3'
miRNA:   3'- gcaUUGCCGGCuGaau-CGGCGGC-CAC- -5'
5701 3' -56.7 NC_001806.1 + 89602 0.7 0.689047
Target:  5'- --cGGCGGCCGACaggagAGUgacguaGCCGGUGg -3'
miRNA:   3'- gcaUUGCCGGCUGaa---UCGg-----CGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.