miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5701 3' -56.7 NC_001806.1 + 131874 0.67 0.858295
Target:  5'- uCGUGGCGGCCgcccgcgccgcgacGACgccGGCCGCCu--- -3'
miRNA:   3'- -GCAUUGCCGG--------------CUGaa-UCGGCGGccac -5'
5701 3' -56.7 NC_001806.1 + 128051 0.67 0.852914
Target:  5'- cCGUGGCGGCC-AC--GGCCcCCaGGUGg -3'
miRNA:   3'- -GCAUUGCCGGcUGaaUCGGcGG-CCAC- -5'
5701 3' -56.7 NC_001806.1 + 143100 0.67 0.845061
Target:  5'- cCGUGACacCCGACgcugggggcgUGGCUGCCGGg- -3'
miRNA:   3'- -GCAUUGccGGCUGa---------AUCGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 73113 0.67 0.845061
Target:  5'- ----cCGGCCG----GGCCGCCGGUc -3'
miRNA:   3'- gcauuGCCGGCugaaUCGGCGGCCAc -5'
5701 3' -56.7 NC_001806.1 + 55540 0.67 0.845061
Target:  5'- aGUGggGCGGcCCGACUUGGCgGg-GGUGg -3'
miRNA:   3'- gCAU--UGCC-GGCUGAAUCGgCggCCAC- -5'
5701 3' -56.7 NC_001806.1 + 112154 0.67 0.842667
Target:  5'- gCGgcACGGCCGACcagaugcugcacguGCUGCUGGa- -3'
miRNA:   3'- -GCauUGCCGGCUGaau-----------CGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 22094 0.67 0.837018
Target:  5'- uGUAcgGCGGCCugGGCgacAGCCGcCCGGg- -3'
miRNA:   3'- gCAU--UGCCGG--CUGaa-UCGGC-GGCCac -5'
5701 3' -56.7 NC_001806.1 + 24793 0.67 0.837018
Target:  5'- --cGACGGCCcgggGGCccuGCCGCCGGc- -3'
miRNA:   3'- gcaUUGCCGG----CUGaauCGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 17485 0.67 0.837018
Target:  5'- --cGACGGuuGGCcgAGCCGCUGaUGg -3'
miRNA:   3'- gcaUUGCCggCUGaaUCGGCGGCcAC- -5'
5701 3' -56.7 NC_001806.1 + 73459 0.67 0.828794
Target:  5'- cCGggGUGGCCGGCccGGCCGCCGc-- -3'
miRNA:   3'- -GCauUGCCGGCUGaaUCGGCGGCcac -5'
5701 3' -56.7 NC_001806.1 + 76060 0.68 0.820394
Target:  5'- ---uGCGGCUGGCgggggGGCUGCUGGa- -3'
miRNA:   3'- gcauUGCCGGCUGaa---UCGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 65651 0.68 0.811827
Target:  5'- --cGGCGGCCucccccuggguGGCUgcgcuggGGCCGCCGGc- -3'
miRNA:   3'- gcaUUGCCGG-----------CUGAa------UCGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 22790 0.68 0.803101
Target:  5'- -----aGGCCGGCcgcgUGGCCGUCGaGUGc -3'
miRNA:   3'- gcauugCCGGCUGa---AUCGGCGGC-CAC- -5'
5701 3' -56.7 NC_001806.1 + 61432 0.68 0.803101
Target:  5'- --cGAUGGCCGcCagcGCCGCCGGg- -3'
miRNA:   3'- gcaUUGCCGGCuGaauCGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 49259 0.68 0.803101
Target:  5'- -aUGGCGGgCGACg-AGCCGCCcGUGc -3'
miRNA:   3'- gcAUUGCCgGCUGaaUCGGCGGcCAC- -5'
5701 3' -56.7 NC_001806.1 + 2218 0.68 0.794223
Target:  5'- --aGGCGGCCGugUccGGCCcgcacaGCCGGUu -3'
miRNA:   3'- gcaUUGCCGGCugAa-UCGG------CGGCCAc -5'
5701 3' -56.7 NC_001806.1 + 144185 0.68 0.794223
Target:  5'- --cGGCGGCCGcCgcAGCCGCCGc-- -3'
miRNA:   3'- gcaUUGCCGGCuGaaUCGGCGGCcac -5'
5701 3' -56.7 NC_001806.1 + 63955 0.68 0.785202
Target:  5'- gGUGAUGGCCcGCagGGUCGCCuuguuuguGGUGg -3'
miRNA:   3'- gCAUUGCCGGcUGaaUCGGCGG--------CCAC- -5'
5701 3' -56.7 NC_001806.1 + 50681 0.68 0.785202
Target:  5'- aCGcGGCGGCCacgcGCgccauucUGGCCGCCGGg- -3'
miRNA:   3'- -GCaUUGCCGGc---UGa------AUCGGCGGCCac -5'
5701 3' -56.7 NC_001806.1 + 145402 0.68 0.776968
Target:  5'- -cUAAgGGCCGGCUggaagaccgccagggGGUCGgCCGGUGu -3'
miRNA:   3'- gcAUUgCCGGCUGAa--------------UCGGC-GGCCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.