miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5701 5' -55.9 NC_001806.1 + 41716 0.66 0.890086
Target:  5'- cUCCCCGGGAcugGCgGGcGCAAACG-CGg -3'
miRNA:   3'- aGGGGGUCCU---UGgUC-CGUUUGCaGUg -5'
5701 5' -55.9 NC_001806.1 + 131637 0.66 0.890086
Target:  5'- aUCCUUAGGGGCCGuGCGAugGaCACc -3'
miRNA:   3'- aGGGGGUCCUUGGUcCGUUugCaGUG- -5'
5701 5' -55.9 NC_001806.1 + 18845 0.66 0.890086
Target:  5'- -gCCCCAGGuuccGCCGGacaccugcaGCAAACGgCACc -3'
miRNA:   3'- agGGGGUCCu---UGGUC---------CGUUUGCaGUG- -5'
5701 5' -55.9 NC_001806.1 + 131585 0.66 0.890086
Target:  5'- aCCCaCCGGGcccGGCCAGGC--ACGgcagCAUg -3'
miRNA:   3'- aGGG-GGUCC---UUGGUCCGuuUGCa---GUG- -5'
5701 5' -55.9 NC_001806.1 + 100943 0.66 0.883185
Target:  5'- cCCCCCAGGcguuuuguGGCCAGGgAGACc---- -3'
miRNA:   3'- aGGGGGUCC--------UUGGUCCgUUUGcagug -5'
5701 5' -55.9 NC_001806.1 + 147552 0.66 0.883185
Target:  5'- gCCCCCccGAGCCGcGCGccacCGUCGCa -3'
miRNA:   3'- aGGGGGucCUUGGUcCGUuu--GCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 51691 0.66 0.883185
Target:  5'- gUCCCCgAGGAcCCcguGGGCGAcuGCGaccccagccuUCACg -3'
miRNA:   3'- -AGGGGgUCCUuGG---UCCGUU--UGC----------AGUG- -5'
5701 5' -55.9 NC_001806.1 + 2735 0.67 0.876059
Target:  5'- gCCCUCGGcGGGCCGGcGCGAcACGgcCACg -3'
miRNA:   3'- aGGGGGUC-CUUGGUC-CGUU-UGCa-GUG- -5'
5701 5' -55.9 NC_001806.1 + 41450 0.67 0.874608
Target:  5'- gCCgCCGcuucggcGGAcacgaccgcuucgGCCAGGCGAGCGUCccGCg -3'
miRNA:   3'- aGGgGGU-------CCU-------------UGGUCCGUUUGCAG--UG- -5'
5701 5' -55.9 NC_001806.1 + 92609 0.67 0.868713
Target:  5'- gCCCCCGGGGuccaACCAGcCGAACc-CGCa -3'
miRNA:   3'- aGGGGGUCCU----UGGUCcGUUUGcaGUG- -5'
5701 5' -55.9 NC_001806.1 + 55332 0.67 0.868713
Target:  5'- gUCCCCCGGG--UgGGGCGGugauguuCGUCAg -3'
miRNA:   3'- -AGGGGGUCCuuGgUCCGUUu------GCAGUg -5'
5701 5' -55.9 NC_001806.1 + 68083 0.67 0.868713
Target:  5'- gUCCCCCAcccacGcGAGCCGGGC----GUCAUg -3'
miRNA:   3'- -AGGGGGU-----C-CUUGGUCCGuuugCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 75596 0.67 0.868713
Target:  5'- cCCUgCAGGAGCUGGG-AAAgGUCAUc -3'
miRNA:   3'- aGGGgGUCCUUGGUCCgUUUgCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 88440 0.67 0.861153
Target:  5'- aCCCgggguuguCCAGGAugaACCGGGUgguGGCGUCGa -3'
miRNA:   3'- aGGG--------GGUCCU---UGGUCCGu--UUGCAGUg -5'
5701 5' -55.9 NC_001806.1 + 27844 0.67 0.861153
Target:  5'- gUCCCCGGGGACgGGGCc-GCccCGCg -3'
miRNA:   3'- aGGGGGUCCUUGgUCCGuuUGcaGUG- -5'
5701 5' -55.9 NC_001806.1 + 122176 0.67 0.860385
Target:  5'- gUCCaCUCGGGccgAACCgaaccagccccgcAGGCAGGCGUCGa -3'
miRNA:   3'- -AGG-GGGUCC---UUGG-------------UCCGUUUGCAGUg -5'
5701 5' -55.9 NC_001806.1 + 81330 0.67 0.856516
Target:  5'- -gCCgCAGGccaaacgcgggccgcAACCAGGCGgccggGGCGUCGCc -3'
miRNA:   3'- agGGgGUCC---------------UUGGUCCGU-----UUGCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 5264 0.67 0.853383
Target:  5'- aCCCCCGccgucgacgcGGAACUAGcGCGGACcgGUCGa -3'
miRNA:   3'- aGGGGGU----------CCUUGGUC-CGUUUG--CAGUg -5'
5701 5' -55.9 NC_001806.1 + 103797 0.67 0.853383
Target:  5'- aCCCCCGGGcggcgccGCCGcGGCGgcGACGggcUCGCu -3'
miRNA:   3'- aGGGGGUCCu------UGGU-CCGU--UUGC---AGUG- -5'
5701 5' -55.9 NC_001806.1 + 58575 0.67 0.845412
Target:  5'- uUCCCUgGGGAACCAGcaccacaaaGCu--CGUCAg -3'
miRNA:   3'- -AGGGGgUCCUUGGUC---------CGuuuGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.