miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5704 3' -56.5 NC_001806.1 + 97260 0.66 0.89122
Target:  5'- --uGUCCCCguuuUACGGCUaccGGGaGGGGu -3'
miRNA:   3'- uuuUAGGGGac--AUGCUGA---CCC-CCCCu -5'
5704 3' -56.5 NC_001806.1 + 132910 0.66 0.877279
Target:  5'- -----gCCCUGgcCGACcucGGGGGGAg -3'
miRNA:   3'- uuuuagGGGACauGCUGac-CCCCCCU- -5'
5704 3' -56.5 NC_001806.1 + 143216 0.66 0.867742
Target:  5'- -uGAUCCCCUgcuacccccaacccGUGCuGGuggugcgggUUGGGGGGGGa -3'
miRNA:   3'- uuUUAGGGGA--------------CAUG-CU---------GACCCCCCCU- -5'
5704 3' -56.5 NC_001806.1 + 13122 0.66 0.862457
Target:  5'- ----cCCCCUgcugGUAgGcCUGGGGGGaGAg -3'
miRNA:   3'- uuuuaGGGGA----CAUgCuGACCCCCC-CU- -5'
5704 3' -56.5 NC_001806.1 + 37961 0.67 0.830349
Target:  5'- cGGGGUCCCCcaggGuUGCGAUUGGuucuGGGGGc -3'
miRNA:   3'- -UUUUAGGGGa---C-AUGCUGACC----CCCCCu -5'
5704 3' -56.5 NC_001806.1 + 149663 0.67 0.830349
Target:  5'- ---cUCCCgUGUAUGAgUGGGGGu-- -3'
miRNA:   3'- uuuuAGGGgACAUGCUgACCCCCccu -5'
5704 3' -56.5 NC_001806.1 + 67572 0.67 0.830349
Target:  5'- -----gCCCUGUcccgcgguaucGCGugUuguGGGGGGGAg -3'
miRNA:   3'- uuuuagGGGACA-----------UGCugA---CCCCCCCU- -5'
5704 3' -56.5 NC_001806.1 + 29512 0.67 0.821849
Target:  5'- ----gCCCCgcgGUACcuGACccUGGGGGGGc -3'
miRNA:   3'- uuuuaGGGGa--CAUG--CUG--ACCCCCCCu -5'
5704 3' -56.5 NC_001806.1 + 99568 0.68 0.795339
Target:  5'- uGGGAUCCggUG-GCGGC-GGGGGGGAa -3'
miRNA:   3'- -UUUUAGGggACaUGCUGaCCCCCCCU- -5'
5704 3' -56.5 NC_001806.1 + 44736 0.68 0.767492
Target:  5'- ----gCCCCgGUugGA--GGGGGGGGc -3'
miRNA:   3'- uuuuaGGGGaCAugCUgaCCCCCCCU- -5'
5704 3' -56.5 NC_001806.1 + 19924 0.69 0.70877
Target:  5'- --cGUCCCCUGUGuuucgUGGgUGGGGuGGGc -3'
miRNA:   3'- uuuUAGGGGACAU-----GCUgACCCC-CCCu -5'
5704 3' -56.5 NC_001806.1 + 55366 0.71 0.58612
Target:  5'- ---cUCCUCUagGUcgggagccggaGCGAUUGGGGGGGAc -3'
miRNA:   3'- uuuuAGGGGA--CA-----------UGCUGACCCCCCCU- -5'
5704 3' -56.5 NC_001806.1 + 147374 0.72 0.575935
Target:  5'- ----gCCCCUGc-CGGCgcgaGGGGGGGAc -3'
miRNA:   3'- uuuuaGGGGACauGCUGa---CCCCCCCU- -5'
5704 3' -56.5 NC_001806.1 + 76043 0.75 0.371177
Target:  5'- ----gCCCCUGgcgcggcuucUGCGGCUGGcGGGGGGg -3'
miRNA:   3'- uuuuaGGGGAC----------AUGCUGACC-CCCCCU- -5'
5704 3' -56.5 NC_001806.1 + 53213 1.06 0.003482
Target:  5'- gAAAAUCCCCUGUACGACUGGGGGGGAu -3'
miRNA:   3'- -UUUUAGGGGACAUGCUGACCCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.