miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5706 3' -58.7 NC_001806.1 + 118747 0.66 0.834454
Target:  5'- -cGGCCGCGGGaaUCcccuggccgcccugaUGCgcggCCGCccCGGa -3'
miRNA:   3'- gaCCGGCGCCU--AG---------------ACGa---GGCGuuGCC- -5'
5706 3' -58.7 NC_001806.1 + 12957 0.66 0.831207
Target:  5'- uCUGGCUGCguggcguugGGGUCUcggacaGCUCCggggGCAGCaGGg -3'
miRNA:   3'- -GACCGGCG---------CCUAGA------CGAGG----CGUUG-CC- -5'
5706 3' -58.7 NC_001806.1 + 139214 0.66 0.822969
Target:  5'- -cGaGCUGCGGAg--GCggcaCGCGACGGc -3'
miRNA:   3'- gaC-CGGCGCCUagaCGag--GCGUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 89521 0.66 0.822969
Target:  5'- -gGGCgGCGag-CUGCUgCGCGGCGc -3'
miRNA:   3'- gaCCGgCGCcuaGACGAgGCGUUGCc -5'
5706 3' -58.7 NC_001806.1 + 41572 0.66 0.822969
Target:  5'- -gGGCaGgGGAgUCUGCaccgCCGCAuuACGGa -3'
miRNA:   3'- gaCCGgCgCCU-AGACGa---GGCGU--UGCC- -5'
5706 3' -58.7 NC_001806.1 + 133090 0.66 0.814565
Target:  5'- aUGGCCGCc-GUCUGC-CUGCAgaucgaggagACGGc -3'
miRNA:   3'- gACCGGCGccUAGACGaGGCGU----------UGCC- -5'
5706 3' -58.7 NC_001806.1 + 102913 0.66 0.814565
Target:  5'- -gGGUCGUugcgcacGAUCUGgaccuccauCUCCGCGACGGc -3'
miRNA:   3'- gaCCGGCGc------CUAGAC---------GAGGCGUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 142127 0.66 0.806003
Target:  5'- -gGGUCGuCGGcGUCUGCUUuuUGUGGCGGc -3'
miRNA:   3'- gaCCGGC-GCC-UAGACGAG--GCGUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 42018 0.66 0.805139
Target:  5'- gCUGGCCGCGGGguuggggUCgUGggUCGUcACGGc -3'
miRNA:   3'- -GACCGGCGCCU-------AG-ACgaGGCGuUGCC- -5'
5706 3' -58.7 NC_001806.1 + 5416 0.66 0.798169
Target:  5'- -gGGUCGUGGAUCcgugucggcagccgcGCUCCGUGugGa -3'
miRNA:   3'- gaCCGGCGCCUAGa--------------CGAGGCGUugCc -5'
5706 3' -58.7 NC_001806.1 + 57424 0.66 0.797292
Target:  5'- aUGGCaCGCGGGgugGUUCCGUcACGc -3'
miRNA:   3'- gACCG-GCGCCUagaCGAGGCGuUGCc -5'
5706 3' -58.7 NC_001806.1 + 111923 0.66 0.797292
Target:  5'- --aGCCGCuGA-UUGC-CCGCGACGGc -3'
miRNA:   3'- gacCGGCGcCUaGACGaGGCGUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 78687 0.66 0.788438
Target:  5'- cCUGGgCGCGcccGUCgucguggcGCUCCGCAACa- -3'
miRNA:   3'- -GACCgGCGCc--UAGa-------CGAGGCGUUGcc -5'
5706 3' -58.7 NC_001806.1 + 89253 0.67 0.77945
Target:  5'- -aGGCgG-GGGUCcccggcugGCUCCGCGAgGGc -3'
miRNA:   3'- gaCCGgCgCCUAGa-------CGAGGCGUUgCC- -5'
5706 3' -58.7 NC_001806.1 + 24713 0.67 0.77945
Target:  5'- -gGGCCGCGGAgggacuUUUGCgcCCGCGcccuGCuGGa -3'
miRNA:   3'- gaCCGGCGCCU------AGACGa-GGCGU----UG-CC- -5'
5706 3' -58.7 NC_001806.1 + 68562 0.67 0.770337
Target:  5'- gCUGGauuCCGCcGGcCUGCgcaCCGCGGCGGc -3'
miRNA:   3'- -GACC---GGCGcCUaGACGa--GGCGUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 86997 0.67 0.770337
Target:  5'- --cGCgaGCGGAUCUGCuUUCGCAugGc -3'
miRNA:   3'- gacCGg-CGCCUAGACG-AGGCGUugCc -5'
5706 3' -58.7 NC_001806.1 + 50160 0.67 0.770337
Target:  5'- --cGCCGCGG---UGUUCCGCAGCu- -3'
miRNA:   3'- gacCGGCGCCuagACGAGGCGUUGcc -5'
5706 3' -58.7 NC_001806.1 + 4639 0.67 0.770337
Target:  5'- -cGGCCGUGacgacGuCUCCGCGGCGGc -3'
miRNA:   3'- gaCCGGCGCcuagaC-GAGGCGUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 23957 0.67 0.769419
Target:  5'- -gGGCCGcCGGAg-UGgUCCGCcgagcgcGGCGGg -3'
miRNA:   3'- gaCCGGC-GCCUagACgAGGCG-------UUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.