miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5706 3' -58.7 NC_001806.1 + 118747 0.66 0.834454
Target:  5'- -cGGCCGCGGGaaUCcccuggccgcccugaUGCgcggCCGCccCGGa -3'
miRNA:   3'- gaCCGGCGCCU--AG---------------ACGa---GGCGuuGCC- -5'
5706 3' -58.7 NC_001806.1 + 44446 0.72 0.460468
Target:  5'- -aGGCCGCGGGcCcgGCgUCCGCGugGa -3'
miRNA:   3'- gaCCGGCGCCUaGa-CG-AGGCGUugCc -5'
5706 3' -58.7 NC_001806.1 + 42629 0.72 0.469553
Target:  5'- aCUGcGCCGCGGcggcGUC-GCgUCCGguGCGGg -3'
miRNA:   3'- -GAC-CGGCGCC----UAGaCG-AGGCguUGCC- -5'
5706 3' -58.7 NC_001806.1 + 90311 0.72 0.497341
Target:  5'- gUGGCCGUGG-UCguggGUUCuCGCAcgACGGg -3'
miRNA:   3'- gACCGGCGCCuAGa---CGAG-GCGU--UGCC- -5'
5706 3' -58.7 NC_001806.1 + 50703 0.71 0.506767
Target:  5'- uCUGGCCGcCGGG-CUcGUcCUGCAGCGGc -3'
miRNA:   3'- -GACCGGC-GCCUaGA-CGaGGCGUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 40579 0.71 0.554937
Target:  5'- -aGcGCCGCGGGUCgGCgUgCGCGGCGa -3'
miRNA:   3'- gaC-CGGCGCCUAGaCG-AgGCGUUGCc -5'
5706 3' -58.7 NC_001806.1 + 72407 0.7 0.564744
Target:  5'- -cGGCCGCGGcUCUGCaUCUuu-ACGGg -3'
miRNA:   3'- gaCCGGCGCCuAGACG-AGGcguUGCC- -5'
5706 3' -58.7 NC_001806.1 + 108651 0.7 0.59441
Target:  5'- gUGGCUGCGGAcaUGCgcCCGCGGCc- -3'
miRNA:   3'- gACCGGCGCCUagACGa-GGCGUUGcc -5'
5706 3' -58.7 NC_001806.1 + 56844 0.7 0.60436
Target:  5'- --cGCCGCGGccaggGCggCCGCGGCGGg -3'
miRNA:   3'- gacCGGCGCCuaga-CGa-GGCGUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 147770 0.73 0.425094
Target:  5'- -cGGCCGCGGAcgCgggggGC-CCGgGGCGGg -3'
miRNA:   3'- gaCCGGCGCCUa-Ga----CGaGGCgUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 126684 0.73 0.425094
Target:  5'- cCUGGagcuCCGgGGAUCUGgUCCGCcGCGa -3'
miRNA:   3'- -GACC----GGCgCCUAGACgAGGCGuUGCc -5'
5706 3' -58.7 NC_001806.1 + 2758 0.73 0.408025
Target:  5'- -cGGCCacggggcgcggGCGGGcCUGCgCCGCGGCGGc -3'
miRNA:   3'- gaCCGG-----------CGCCUaGACGaGGCGUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 98700 0.8 0.158217
Target:  5'- gCUGGCCGUGGGUCUGUuggUCCuggccggccugGCGGCGGc -3'
miRNA:   3'- -GACCGGCGCCUAGACG---AGG-----------CGUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 149816 0.78 0.217402
Target:  5'- -aGGCCgGCGGGUaCUcGCUCCGgGGCGGg -3'
miRNA:   3'- gaCCGG-CGCCUA-GA-CGAGGCgUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 120340 0.75 0.344219
Target:  5'- -gGGCgGCGGGUCgucccGCUCgGCGACGa -3'
miRNA:   3'- gaCCGgCGCCUAGa----CGAGgCGUUGCc -5'
5706 3' -58.7 NC_001806.1 + 3102 0.75 0.344219
Target:  5'- -cGGCCGCGGA---GCUCgGCAggcGCGGg -3'
miRNA:   3'- gaCCGGCGCCUagaCGAGgCGU---UGCC- -5'
5706 3' -58.7 NC_001806.1 + 108551 0.74 0.351029
Target:  5'- gCUGGCCGCGcccgCcGCUCCGCGgucaaacGCGGa -3'
miRNA:   3'- -GACCGGCGCcua-GaCGAGGCGU-------UGCC- -5'
5706 3' -58.7 NC_001806.1 + 95049 0.74 0.367285
Target:  5'- gUGGCCGUGGAacuggcgCUGUUCgGgCGGCGGg -3'
miRNA:   3'- gACCGGCGCCUa------GACGAGgC-GUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 95482 0.74 0.391391
Target:  5'- -cGGCCGCGGAcgUGCgggaGCGACGGc -3'
miRNA:   3'- gaCCGGCGCCUagACGagg-CGUUGCC- -5'
5706 3' -58.7 NC_001806.1 + 114320 0.73 0.399653
Target:  5'- aUGGCCGaacgcacaaCGGcgCUGCUCUGCucgGCGGc -3'
miRNA:   3'- gACCGGC---------GCCuaGACGAGGCGu--UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.