miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5707 3' -59.4 NC_001806.1 + 3667 0.67 0.664088
Target:  5'- uGCGCCGGCGCCGgGgCUccccGCGGCccccgUCAGc -3'
miRNA:   3'- uCGUGGCUGUGGCgU-GA----CGCCG-----AGUU- -5'
5707 3' -59.4 NC_001806.1 + 2494 0.67 0.664088
Target:  5'- cGuCGCCGcCGCCGCAC-GCGGCc--- -3'
miRNA:   3'- uC-GUGGCuGUGGCGUGaCGCCGaguu -5'
5707 3' -59.4 NC_001806.1 + 136226 0.67 0.64377
Target:  5'- cAGCACCaGACAuucuCCGCGCUGCccgcugauggGGuCUCGc -3'
miRNA:   3'- -UCGUGG-CUGU----GGCGUGACG----------CC-GAGUu -5'
5707 3' -59.4 NC_001806.1 + 94497 0.67 0.64377
Target:  5'- cGGCGCCacCGCCGCGCUggaGCGcGUUCGGg -3'
miRNA:   3'- -UCGUGGcuGUGGCGUGA---CGC-CGAGUU- -5'
5707 3' -59.4 NC_001806.1 + 136042 0.67 0.64377
Target:  5'- cGGCACCGGCcaccCCGCGCUcGCugucGCUCu- -3'
miRNA:   3'- -UCGUGGCUGu---GGCGUGA-CGc---CGAGuu -5'
5707 3' -59.4 NC_001806.1 + 4191 0.68 0.623415
Target:  5'- gGGC-CCGGCGCCGgGCcaCGGCUCc- -3'
miRNA:   3'- -UCGuGGCUGUGGCgUGacGCCGAGuu -5'
5707 3' -59.4 NC_001806.1 + 132433 0.68 0.623415
Target:  5'- aAGCGCCGGCGagaaguucuCCGCGCcgGC-GCUCGu -3'
miRNA:   3'- -UCGUGGCUGU---------GGCGUGa-CGcCGAGUu -5'
5707 3' -59.4 NC_001806.1 + 137821 0.68 0.613244
Target:  5'- cAGUACgCGGC-CCGC-CUGCGGCcCGu -3'
miRNA:   3'- -UCGUG-GCUGuGGCGuGACGCCGaGUu -5'
5707 3' -59.4 NC_001806.1 + 51262 0.68 0.603087
Target:  5'- cAGCGCCGgacGCGCgGCGCgagcucccUGCGGCUg-- -3'
miRNA:   3'- -UCGUGGC---UGUGgCGUG--------ACGCCGAguu -5'
5707 3' -59.4 NC_001806.1 + 84855 0.68 0.603087
Target:  5'- gAGCGCCGGCGguCgCGCuccuCUGCGGC-CGg -3'
miRNA:   3'- -UCGUGGCUGU--G-GCGu---GACGCCGaGUu -5'
5707 3' -59.4 NC_001806.1 + 50151 0.68 0.603087
Target:  5'- cGGCcCCGACGCCGCGgUGUuccgcaGCUCGc -3'
miRNA:   3'- -UCGuGGCUGUGGCGUgACGc-----CGAGUu -5'
5707 3' -59.4 NC_001806.1 + 24409 0.68 0.603087
Target:  5'- cGCGCCGcCGCUGCGCcugugccGCGGCggCAAc -3'
miRNA:   3'- uCGUGGCuGUGGCGUGa------CGCCGa-GUU- -5'
5707 3' -59.4 NC_001806.1 + 133285 0.68 0.603087
Target:  5'- cGGCugCGGCACC-CACUGUgccuGGCccUCGAg -3'
miRNA:   3'- -UCGugGCUGUGGcGUGACG----CCG--AGUU- -5'
5707 3' -59.4 NC_001806.1 + 1918 0.68 0.592951
Target:  5'- cGGC-CCGAgGCCaGCACcgUGCGGCgCAGg -3'
miRNA:   3'- -UCGuGGCUgUGG-CGUG--ACGCCGaGUU- -5'
5707 3' -59.4 NC_001806.1 + 85716 0.68 0.582843
Target:  5'- uAGCGCCGGCACC-CACcgccccgaacccUGCGGUcCGGa -3'
miRNA:   3'- -UCGUGGCUGUGGcGUG------------ACGCCGaGUU- -5'
5707 3' -59.4 NC_001806.1 + 33740 0.68 0.581835
Target:  5'- cGCGCCGGCuCUGCggugucggcggcgGCUGCGGCg--- -3'
miRNA:   3'- uCGUGGCUGuGGCG-------------UGACGCCGaguu -5'
5707 3' -59.4 NC_001806.1 + 147983 0.69 0.56174
Target:  5'- aGGgGCCaGACGCCccccgcgGCGCcGCGGCUCGc -3'
miRNA:   3'- -UCgUGG-CUGUGG-------CGUGaCGCCGAGUu -5'
5707 3' -59.4 NC_001806.1 + 52492 0.69 0.56174
Target:  5'- gGGCGCCGuCGCUcCACuacgaguccauccUGCGGCUCGu -3'
miRNA:   3'- -UCGUGGCuGUGGcGUG-------------ACGCCGAGUu -5'
5707 3' -59.4 NC_001806.1 + 126142 0.69 0.542828
Target:  5'- cGGCgagGCCGGCGCCGaCAC-GCGGCg--- -3'
miRNA:   3'- -UCG---UGGCUGUGGC-GUGaCGCCGaguu -5'
5707 3' -59.4 NC_001806.1 + 23228 0.69 0.542828
Target:  5'- cGCACCgGACGCCGCcgacgcGCUgGCGGC-CGc -3'
miRNA:   3'- uCGUGG-CUGUGGCG------UGA-CGCCGaGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.