miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5708 3' -58.2 NC_001806.1 + 4441 0.66 0.814837
Target:  5'- gGGGGCGGcGuCCGCccggggGCuGCCGGCgCCGCg -3'
miRNA:   3'- -CUCUGCC-CuGGCG------CGuUGGUUG-GGUG- -5'
5708 3' -58.2 NC_001806.1 + 59487 0.66 0.80705
Target:  5'- aGAGACaggcucgggugucccGGACCGuCGC-ACCAACCaCGCc -3'
miRNA:   3'- -CUCUGc--------------CCUGGC-GCGuUGGUUGG-GUG- -5'
5708 3' -58.2 NC_001806.1 + 84731 0.66 0.806177
Target:  5'- uGAGGCGGG--CGCGCuGCUuaGACgCCACu -3'
miRNA:   3'- -CUCUGCCCugGCGCGuUGG--UUG-GGUG- -5'
5708 3' -58.2 NC_001806.1 + 115660 0.66 0.806177
Target:  5'- --aACGGGGaagcccaCGCGCGGgaGACCCACu -3'
miRNA:   3'- cucUGCCCUg------GCGCGUUggUUGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 65937 0.66 0.806177
Target:  5'- gGAGcACGGcGACCG-GCAAguuuCCAaagcACCCACc -3'
miRNA:   3'- -CUC-UGCC-CUGGCgCGUU----GGU----UGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 7804 0.66 0.806177
Target:  5'- aGGGGCcauguuGGGCCgccacGCGCGGCUggUCCACa -3'
miRNA:   3'- -CUCUGc-----CCUGG-----CGCGUUGGuuGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 137346 0.66 0.806177
Target:  5'- -uGACGGGcGCCacGCGCAuugCGGCCCAa -3'
miRNA:   3'- cuCUGCCC-UGG--CGCGUug-GUUGGGUg -5'
5708 3' -58.2 NC_001806.1 + 5505 0.66 0.806177
Target:  5'- gGAGcaGCGGaGGCCGC-CGGCCc-CCCGCc -3'
miRNA:   3'- -CUC--UGCC-CUGGCGcGUUGGuuGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 120343 0.66 0.805303
Target:  5'- -cGGCGGGucgucCCGCucgGCGAcgaccucCCGGCCCGCu -3'
miRNA:   3'- cuCUGCCCu----GGCG---CGUU-------GGUUGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 131291 0.66 0.803549
Target:  5'- -cGugGGGGCgcuguuUGCGCAcgcacucauccagcGCCAACCC-Ca -3'
miRNA:   3'- cuCugCCCUG------GCGCGU--------------UGGUUGGGuG- -5'
5708 3' -58.2 NC_001806.1 + 146090 0.66 0.800907
Target:  5'- cGGGCGGGcaggcGCuCGCGgAAacuuaacacccacacCCAACCCACu -3'
miRNA:   3'- cUCUGCCC-----UG-GCGCgUU---------------GGUUGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 6900 0.66 0.797364
Target:  5'- -cGGCGGGACCGUG--ACCGAcagucCCCGu -3'
miRNA:   3'- cuCUGCCCUGGCGCguUGGUU-----GGGUg -5'
5708 3' -58.2 NC_001806.1 + 151447 0.66 0.797364
Target:  5'- gGGGGCGGcGGCgGgGCGGCCGcggGCgCGCu -3'
miRNA:   3'- -CUCUGCC-CUGgCgCGUUGGU---UGgGUG- -5'
5708 3' -58.2 NC_001806.1 + 49114 0.66 0.797364
Target:  5'- --cGCGGGGCgcaggaggCGCGCAuCC-ACCCGCc -3'
miRNA:   3'- cucUGCCCUG--------GCGCGUuGGuUGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 24707 0.66 0.797364
Target:  5'- -uGGCGcGGGCCGCGgaggGACUuuugcGCCCGCg -3'
miRNA:   3'- cuCUGC-CCUGGCGCg---UUGGu----UGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 3096 0.66 0.797364
Target:  5'- -cGGCGGcGGCCGCGgAGCuCGGcaggcgcggguCCCGCg -3'
miRNA:   3'- cuCUGCC-CUGGCGCgUUG-GUU-----------GGGUG- -5'
5708 3' -58.2 NC_001806.1 + 122118 0.66 0.797364
Target:  5'- -cGAUGGuACUGCGCGACCcgUCCGg -3'
miRNA:   3'- cuCUGCCcUGGCGCGUUGGuuGGGUg -5'
5708 3' -58.2 NC_001806.1 + 144173 0.66 0.796475
Target:  5'- cGAGAccgaacaCGGcGGCCGcCGCAGCCG--CCGCa -3'
miRNA:   3'- -CUCU-------GCC-CUGGC-GCGUUGGUugGGUG- -5'
5708 3' -58.2 NC_001806.1 + 150666 0.66 0.794692
Target:  5'- uGGcCGGGccccGCCGCGCuggcggccgccgauGGCCAGuCCCGCc -3'
miRNA:   3'- cUCuGCCC----UGGCGCG--------------UUGGUU-GGGUG- -5'
5708 3' -58.2 NC_001806.1 + 66247 0.66 0.794692
Target:  5'- uGGGCGGGGCguuugcuacgcucaCGCGCAu---GCCCGCc -3'
miRNA:   3'- cUCUGCCCUG--------------GCGCGUugguUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.