Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5708 | 5' | -57.4 | NC_001806.1 | + | 3498 | 0.68 | 0.694988 |
Target: 5'- -cGUCGGCGUcgGcGUGgcgGGCgGCGUCg -3' miRNA: 3'- aaCGGCCGCA--CaCACaa-UCGgCGCAG- -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 4503 | 0.73 | 0.43651 |
Target: 5'- -cGCCucGCGUGcGUGgucGGCCGCGUCg -3' miRNA: 3'- aaCGGc-CGCACaCACaa-UCGGCGCAG- -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 4760 | 0.69 | 0.664385 |
Target: 5'- -cGCCGGCGgc---GUcGGCUGCGUCg -3' miRNA: 3'- aaCGGCCGCacacaCAaUCGGCGCAG- -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 4937 | 0.68 | 0.705095 |
Target: 5'- -cGCCGGCGUcgGUGcccGCCGCGg- -3' miRNA: 3'- aaCGGCCGCAcaCACaauCGGCGCag -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 25939 | 0.66 | 0.835813 |
Target: 5'- -gGCgGGCGUGgg-GgcggGGCCGCGg- -3' miRNA: 3'- aaCGgCCGCACacaCaa--UCGGCGCag -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 40047 | 0.66 | 0.841578 |
Target: 5'- gUGCCGGCGUcaaugguaaacagcGUGUGcaggcGGuuGCuGUCg -3' miRNA: 3'- aACGGCCGCA--------------CACACaa---UCggCG-CAG- -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 48785 | 1.07 | 0.002514 |
Target: 5'- gUUGCCGGCGUGUGUGUUAGCCGCGUCu -3' miRNA: 3'- -AACGGCCGCACACACAAUCGGCGCAG- -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 50752 | 0.71 | 0.541763 |
Target: 5'- gUGgUGGCGUGcGUGacacUGGCCGCGUUu -3' miRNA: 3'- aACgGCCGCACaCACa---AUCGGCGCAG- -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 66824 | 0.67 | 0.79213 |
Target: 5'- -gGCCGGCccggGUGgccgGUGUgcGCCGCcUCc -3' miRNA: 3'- aaCGGCCG----CACa---CACAauCGGCGcAG- -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 98640 | 0.67 | 0.754508 |
Target: 5'- -gGgCGGCGUG-GUaucGGCCGUGUCg -3' miRNA: 3'- aaCgGCCGCACaCAcaaUCGGCGCAG- -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 100810 | 0.66 | 0.835813 |
Target: 5'- -cGCCGGCGacagGUGgcgaaagGgcgcgaUGGCgGCGUCg -3' miRNA: 3'- aaCGGCCGCa---CACa------Ca-----AUCGgCGCAG- -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 108636 | 0.7 | 0.582218 |
Target: 5'- -aGCCGcGCG-GUGUGcgUGGCUGCGg- -3' miRNA: 3'- aaCGGC-CGCaCACACa-AUCGGCGCag -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 122366 | 0.72 | 0.473521 |
Target: 5'- -cGCUGGCGgaaGUGgcgcacGGCCGCGUCg -3' miRNA: 3'- aaCGGCCGCa--CACacaa--UCGGCGCAG- -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 137845 | 0.67 | 0.754508 |
Target: 5'- gUGuuGGUGUGUGUGggcucGCCgacgcagacgGCGUCc -3' miRNA: 3'- aACggCCGCACACACaau--CGG----------CGCAG- -5' |
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5708 | 5' | -57.4 | NC_001806.1 | + | 146500 | 0.69 | 0.633543 |
Target: 5'- -cGCUGGUGUGUG-GUgc-CCGUGUCu -3' miRNA: 3'- aaCGGCCGCACACaCAaucGGCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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