miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 3' -55.5 NC_001806.1 + 96383 0.66 0.901083
Target:  5'- -----cGCCCcCgcGCGGGGGCgccggugguUCGUCg -3'
miRNA:   3'- cuaauaCGGGaGa-UGCCCCCG---------AGCAG- -5'
5709 3' -55.5 NC_001806.1 + 42649 0.66 0.901083
Target:  5'- -----cGUCCggUGCGGGGGCUggCGUUg -3'
miRNA:   3'- cuaauaCGGGagAUGCCCCCGA--GCAG- -5'
5709 3' -55.5 NC_001806.1 + 148170 0.67 0.88072
Target:  5'- -----gGCgCCUCUGCguggGGGGGCgcggggCGUCc -3'
miRNA:   3'- cuaauaCG-GGAGAUG----CCCCCGa-----GCAG- -5'
5709 3' -55.5 NC_001806.1 + 112436 0.67 0.88072
Target:  5'- -----gGCCggUCgACGGGGuGCUCGUCa -3'
miRNA:   3'- cuaauaCGGg-AGaUGCCCC-CGAGCAG- -5'
5709 3' -55.5 NC_001806.1 + 82723 0.67 0.866009
Target:  5'- ---gGUGUCCggggUCUGCGGGgcGGCggCGUCg -3'
miRNA:   3'- cuaaUACGGG----AGAUGCCC--CCGa-GCAG- -5'
5709 3' -55.5 NC_001806.1 + 41815 0.67 0.858328
Target:  5'- -----gGCCC-CgcaauacGCGGGGGCgggCGUCa -3'
miRNA:   3'- cuaauaCGGGaGa------UGCCCCCGa--GCAG- -5'
5709 3' -55.5 NC_001806.1 + 79251 0.68 0.841526
Target:  5'- -----gGCCCUgUggaccuuguugggGCGGaGGGCUCGUUg -3'
miRNA:   3'- cuaauaCGGGAgA-------------UGCC-CCCGAGCAG- -5'
5709 3' -55.5 NC_001806.1 + 116898 0.68 0.834059
Target:  5'- ----cUGCCgCUUUACGaGGcGCUCGUCg -3'
miRNA:   3'- cuaauACGG-GAGAUGCcCC-CGAGCAG- -5'
5709 3' -55.5 NC_001806.1 + 9439 0.69 0.789969
Target:  5'- aGAUUgAUGCCCaucgCUACGGGGGUa---- -3'
miRNA:   3'- -CUAA-UACGGGa---GAUGCCCCCGagcag -5'
5709 3' -55.5 NC_001806.1 + 4947 0.7 0.712373
Target:  5'- ---gGUGCCCgCcGCGGGGGCccuccCGUCc -3'
miRNA:   3'- cuaaUACGGGaGaUGCCCCCGa----GCAG- -5'
5709 3' -55.5 NC_001806.1 + 4428 0.72 0.588998
Target:  5'- gGGUg--GCCCgg-GCGGGGGCggCGUCc -3'
miRNA:   3'- -CUAauaCGGGagaUGCCCCCGa-GCAG- -5'
5709 3' -55.5 NC_001806.1 + 46013 1.1 0.002558
Target:  5'- gGAUUAUGCCCUCUACGGGGGCUCGUCa -3'
miRNA:   3'- -CUAAUACGGGAGAUGCCCCCGAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.