miRNA display CGI


Results 101 - 120 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 56701 0.71 0.507535
Target:  5'- cCGG-GAAC-CCCGGgucgcucuGGGUCCUCCGGg -3'
miRNA:   3'- uGCUgCUUGuGGGCC--------UCCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 55312 0.71 0.507535
Target:  5'- gGCGcuguCGuACACCaGGA-GUCCCCCGGg -3'
miRNA:   3'- -UGCu---GCuUGUGGgCCUcCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 21188 0.71 0.507535
Target:  5'- cGCGACGAGCG---GGGGG-CCCUCGGg -3'
miRNA:   3'- -UGCUGCUUGUgggCCUCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 120863 0.72 0.410968
Target:  5'- cCGGCGGcC-CCUGGcgccgccuGGUCCCCCGGg -3'
miRNA:   3'- uGCUGCUuGuGGGCCu-------CCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 22045 0.72 0.427689
Target:  5'- aGCGGgGAGCcgugGCCCGGcgccGGGcccccgCCCCCGGg -3'
miRNA:   3'- -UGCUgCUUG----UGGGCC----UCCa-----GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 26255 0.72 0.419278
Target:  5'- gGCGGCGGGCAgCCCGGGc--CCCCCGcGg -3'
miRNA:   3'- -UGCUGCUUGU-GGGCCUccaGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 21276 0.72 0.4362
Target:  5'- uCGACG-ACGCCCggcgggacgGGAGGgCCCCCGcGg -3'
miRNA:   3'- uGCUGCuUGUGGG---------CCUCCaGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 77520 0.72 0.4362
Target:  5'- uGCGagugaGCGGAgGCCCGG-GG-CCCCUGGu -3'
miRNA:   3'- -UGC-----UGCUUgUGGGCCuCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 109070 0.73 0.378774
Target:  5'- cCGAUaAACGCCCGcGGGGcCCCCgCGGa -3'
miRNA:   3'- uGCUGcUUGUGGGC-CUCCaGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 3556 0.73 0.378774
Target:  5'- cGCGGCGGACAgCCGccccagggcggcGAGGaUCCCCgCGGc -3'
miRNA:   3'- -UGCUGCUUGUgGGC------------CUCC-AGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 103478 0.73 0.374092
Target:  5'- gGCGugGGAaaACCCGGGGGcuguugucggguggcUCCCgCCGGa -3'
miRNA:   3'- -UGCugCUUg-UGGGCCUCC---------------AGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 140027 0.73 0.363323
Target:  5'- cGCGGCGAaaGCGCCCGGAGcG-CCacggCCGGc -3'
miRNA:   3'- -UGCUGCU--UGUGGGCCUC-CaGGg---GGCC- -5'
5709 5' -60.3 NC_001806.1 + 23940 0.73 0.386662
Target:  5'- gGCGGCGGG-GCCUGGGGGggCCgCCGGa -3'
miRNA:   3'- -UGCUGCUUgUGGGCCUCCa-GGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 108710 0.73 0.386662
Target:  5'- cGCGACGu--GCUCGGGGGagaucaccCCCCCGGg -3'
miRNA:   3'- -UGCUGCuugUGGGCCUCCa-------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 10404 0.73 0.394659
Target:  5'- -aGGCGGGaGCCgGGGGGUCCCgCUGGc -3'
miRNA:   3'- ugCUGCUUgUGGgCCUCCAGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 4361 0.73 0.394659
Target:  5'- uGCGgcccGCGGAgGCCgCGGGGGUCCucgccgccgCCCGGg -3'
miRNA:   3'- -UGC----UGCUUgUGG-GCCUCCAGG---------GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 6792 0.73 0.394659
Target:  5'- gGCGGCcaGAACcgccgugcacgACCCGGAGcGUCCCCUGc -3'
miRNA:   3'- -UGCUG--CUUG-----------UGGGCCUC-CAGGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 79543 0.73 0.394659
Target:  5'- cGCGGCcGGCGCCCGuGGG-CCCCCGc -3'
miRNA:   3'- -UGCUGcUUGUGGGCcUCCaGGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 106679 0.73 0.402761
Target:  5'- -gGACGAAaacccCCCGGGGGcucuucccgggCCCCCGGg -3'
miRNA:   3'- ugCUGCUUgu---GGGCCUCCa----------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 127268 0.74 0.348316
Target:  5'- cCGGCGGACcCCCGGAGGcgccUgCCCCGc -3'
miRNA:   3'- uGCUGCUUGuGGGCCUCC----AgGGGGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.