miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 100069 0.7 0.553587
Target:  5'- gGCGACGcuuucccGACcCCCGGAccccagGGUCUCCCGcGg -3'
miRNA:   3'- -UGCUGC-------UUGuGGGCCU------CCAGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 5583 0.7 0.545024
Target:  5'- cCGACGccGGCACgCCGGGGG-CCCgUGGc -3'
miRNA:   3'- uGCUGC--UUGUG-GGCCUCCaGGGgGCC- -5'
5709 5' -60.3 NC_001806.1 + 13647 0.7 0.544075
Target:  5'- cGCGcCGGACcCCCGGAgggucggucagcuGGUCCaggaCCGGa -3'
miRNA:   3'- -UGCuGCUUGuGGGCCU-------------CCAGGg---GGCC- -5'
5709 5' -60.3 NC_001806.1 + 102047 0.7 0.526154
Target:  5'- uUGAUGGcccccgagucGgACCCGGAGG-CCCCaCGGg -3'
miRNA:   3'- uGCUGCU----------UgUGGGCCUCCaGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 64954 0.7 0.526154
Target:  5'- cCGGCGucGGCGCCCGGgccGGGggUCCCGGg -3'
miRNA:   3'- uGCUGC--UUGUGGGCC---UCCagGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 52544 0.7 0.526154
Target:  5'- gACGACGuGguCCgCGGGGccUCCCCCGGa -3'
miRNA:   3'- -UGCUGCuUguGG-GCCUCc-AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 80251 0.7 0.51588
Target:  5'- -gGGCGGuguuGCGCCCGGAGGcccgguuUCCCgCCGc -3'
miRNA:   3'- ugCUGCU----UGUGGGCCUCC-------AGGG-GGCc -5'
5709 5' -60.3 NC_001806.1 + 88774 0.69 0.602746
Target:  5'- aACGugaACGGcCACCCGGuGGcCUUCCGGa -3'
miRNA:   3'- -UGC---UGCUuGUGGGCCuCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 1683 0.69 0.611497
Target:  5'- cGCGcCGGGCGCCauggcguCGGuGGUCCCCgaGGc -3'
miRNA:   3'- -UGCuGCUUGUGG-------GCCuCCAGGGGg-CC- -5'
5709 5' -60.3 NC_001806.1 + 126614 0.69 0.619286
Target:  5'- aGCGGCGuuguCUCGGAGGUgcuucuguuuggcgCCCCCGa -3'
miRNA:   3'- -UGCUGCuuguGGGCCUCCA--------------GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 2286 0.69 0.622208
Target:  5'- uCGGCGGAcCACuCCGGcGGccCCCCCGa -3'
miRNA:   3'- uGCUGCUU-GUG-GGCCuCCa-GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 27816 0.69 0.622208
Target:  5'- aAUGAUauucuuuggGGGCGCCgGGuuGGUCCCCgGGg -3'
miRNA:   3'- -UGCUG---------CUUGUGGgCCu-CCAGGGGgCC- -5'
5709 5' -60.3 NC_001806.1 + 125829 0.69 0.593042
Target:  5'- uAUGGCGccuGACGCgCCGcGGG-CCCCCGGc -3'
miRNA:   3'- -UGCUGC---UUGUG-GGCcUCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 22564 0.69 0.593042
Target:  5'- cUGACGGGgGCCgCGG-GGagCCCCGGc -3'
miRNA:   3'- uGCUGCUUgUGG-GCCuCCagGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 20394 0.69 0.593042
Target:  5'- cCGGCGGGCGggaCCGGGGGg--CCCGGg -3'
miRNA:   3'- uGCUGCUUGUg--GGCCUCCaggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 19107 0.69 0.583363
Target:  5'- cCGACGGgguggGgGCCCGGGGcugcGUUUCCCGGg -3'
miRNA:   3'- uGCUGCU-----UgUGGGCCUC----CAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 6338 0.69 0.583363
Target:  5'- -gGACGcAC-CCCGGGGG-CCUCCGa -3'
miRNA:   3'- ugCUGCuUGuGGGCCUCCaGGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 83041 0.69 0.582397
Target:  5'- cUGGCGAGCGuCgCGGugugcgaAGaGUCCCCCGGc -3'
miRNA:   3'- uGCUGCUUGU-GgGCC-------UC-CAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 43362 0.69 0.573717
Target:  5'- uCGAUG-ACGCCCuGGGGUCCCUgGa -3'
miRNA:   3'- uGCUGCuUGUGGGcCUCCAGGGGgCc -5'
5709 5' -60.3 NC_001806.1 + 86331 0.69 0.622208
Target:  5'- gACGGCcccGAACGCCUGca-GUCCCUCGGg -3'
miRNA:   3'- -UGCUG---CUUGUGGGCcucCAGGGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.