miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 20394 0.69 0.593042
Target:  5'- cCGGCGGGCGggaCCGGGGGg--CCCGGg -3'
miRNA:   3'- uGCUGCUUGUg--GGCCUCCaggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 58553 0.68 0.680535
Target:  5'- -aGGCGcAACugaACgUCGGGGGUUCCCUGGg -3'
miRNA:   3'- ugCUGC-UUG---UG-GGCCUCCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 28230 0.68 0.680535
Target:  5'- uUGGgGGGCGCCauguuGGGGGaCCCCCGa -3'
miRNA:   3'- uGCUgCUUGUGGg----CCUCCaGGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 369 0.68 0.680535
Target:  5'- cGCGcGCGcGCGCCCGcGGGGgg-CCCGGg -3'
miRNA:   3'- -UGC-UGCuUGUGGGC-CUCCaggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 152079 0.68 0.680535
Target:  5'- cGCGcGCGcGCGCCCGcGGGGgg-CCCGGg -3'
miRNA:   3'- -UGC-UGCuUGUGGGC-CUCCaggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 70759 0.68 0.680535
Target:  5'- gGCGuCGAagcuGCugUCGGgagaccAGGUCCCCgGGu -3'
miRNA:   3'- -UGCuGCU----UGugGGCC------UCCAGGGGgCC- -5'
5709 5' -60.3 NC_001806.1 + 71410 0.68 0.6815
Target:  5'- gACGACGAGaugauCCCGGAGGacaccgucgcgccaCCCaCGGa -3'
miRNA:   3'- -UGCUGCUUgu---GGGCCUCCag------------GGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 136819 0.68 0.670861
Target:  5'- gACGACGuuguACACCCccuGG-CCCUCGGu -3'
miRNA:   3'- -UGCUGCu---UGUGGGccuCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 77440 0.68 0.670861
Target:  5'- -aGACGcccGCGCCCGGGcGUCCgccccaCCCGGc -3'
miRNA:   3'- ugCUGCu--UGUGGGCCUcCAGG------GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 77711 0.68 0.661158
Target:  5'- cCGACGGACACCCuGGA-GUCggCCUCGa -3'
miRNA:   3'- uGCUGCUUGUGGG-CCUcCAG--GGGGCc -5'
5709 5' -60.3 NC_001806.1 + 83269 0.68 0.627079
Target:  5'- gGCGACGGaggggguucgggcGgGCgCGGAGGaccccgcaacccgCCCCCGGa -3'
miRNA:   3'- -UGCUGCU-------------UgUGgGCCUCCa------------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 131471 0.68 0.631952
Target:  5'- gGCGGCgcuguugccgGAACGCaCCGaGGGGccaaguuggCCCCCGGa -3'
miRNA:   3'- -UGCUG----------CUUGUG-GGC-CUCCa--------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 126473 0.68 0.641697
Target:  5'- aGCGuGCGAuacuucGCGCCCGGGcGcGUCCccggCCCGGa -3'
miRNA:   3'- -UGC-UGCU------UGUGGGCCU-C-CAGG----GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 90334 0.68 0.651434
Target:  5'- cACGACGGG-GCUCGGGGGUaCCgCGGu -3'
miRNA:   3'- -UGCUGCUUgUGGGCCUCCAgGGgGCC- -5'
5709 5' -60.3 NC_001806.1 + 34307 0.68 0.652407
Target:  5'- aGCGGCGGggggcgGCGCgCCGGAcggGGcgcuggagauaacggCCCCCGGg -3'
miRNA:   3'- -UGCUGCU------UGUG-GGCCU---CCa--------------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 3094 0.68 0.658243
Target:  5'- gGCGGCGGcgGCCgCGGAgcucggcaggcgcgGGUCCCgCGGc -3'
miRNA:   3'- -UGCUGCUugUGG-GCCU--------------CCAGGGgGCC- -5'
5709 5' -60.3 NC_001806.1 + 72619 0.67 0.68921
Target:  5'- cGCGACGAcagggccuccgagACAuCCCGGGggacggccGGUCCgUCGGc -3'
miRNA:   3'- -UGCUGCU-------------UGU-GGGCCU--------CCAGGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 100736 0.67 0.690173
Target:  5'- cACGcCGGGCGCCC--AGGUgCgCCCGGa -3'
miRNA:   3'- -UGCuGCUUGUGGGccUCCAgG-GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 5374 0.67 0.696894
Target:  5'- cGCGGCGAGCGucugacggucugucUCUGGcGGUCCCgcgUCGGg -3'
miRNA:   3'- -UGCUGCUUGU--------------GGGCCuCCAGGG---GGCC- -5'
5709 5' -60.3 NC_001806.1 + 46433 0.67 0.698809
Target:  5'- cGCGGuCGGGCGCCUGGcGG-CCaugcaugCCCGGa -3'
miRNA:   3'- -UGCU-GCUUGUGGGCCuCCaGG-------GGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.