miRNA display CGI


Results 81 - 100 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 77440 0.68 0.670861
Target:  5'- -aGACGcccGCGCCCGGGcGUCCgccccaCCCGGc -3'
miRNA:   3'- ugCUGCu--UGUGGGCCUcCAGG------GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 77520 0.72 0.4362
Target:  5'- uGCGagugaGCGGAgGCCCGG-GG-CCCCUGGu -3'
miRNA:   3'- -UGC-----UGCUUgUGGGCCuCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 77711 0.68 0.661158
Target:  5'- cCGACGGACACCCuGGA-GUCggCCUCGa -3'
miRNA:   3'- uGCUGCUUGUGGG-CCUcCAG--GGGGCc -5'
5709 5' -60.3 NC_001806.1 + 78993 0.66 0.774001
Target:  5'- uUGugGGAaaACCCGGAcc-CCCCCGGc -3'
miRNA:   3'- uGCugCUUg-UGGGCCUccaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 79543 0.73 0.394659
Target:  5'- cGCGGCcGGCGCCCGuGGG-CCCCCGc -3'
miRNA:   3'- -UGCUGcUUGUGGGCcUCCaGGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 80251 0.7 0.51588
Target:  5'- -gGGCGGuguuGCGCCCGGAGGcccgguuUCCCgCCGc -3'
miRNA:   3'- ugCUGCU----UGUGGGCCUCC-------AGGG-GGCc -5'
5709 5' -60.3 NC_001806.1 + 83041 0.69 0.582397
Target:  5'- cUGGCGAGCGuCgCGGugugcgaAGaGUCCCCCGGc -3'
miRNA:   3'- uGCUGCUUGU-GgGCC-------UC-CAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 83269 0.68 0.627079
Target:  5'- gGCGACGGaggggguucgggcGgGCgCGGAGGaccccgcaacccgCCCCCGGa -3'
miRNA:   3'- -UGCUGCU-------------UgUGgGCCUCCa------------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 85999 0.66 0.800161
Target:  5'- gGCGACGGcguCuCCCGGGGGcgCUUggCCGGg -3'
miRNA:   3'- -UGCUGCUu--GuGGGCCUCCa-GGG--GGCC- -5'
5709 5' -60.3 NC_001806.1 + 86331 0.69 0.622208
Target:  5'- gACGGCcccGAACGCCUGca-GUCCCUCGGg -3'
miRNA:   3'- -UGCUG---CUUGUGGGCcucCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 87401 0.67 0.737549
Target:  5'- uGCGGcCGGACGCuuGGGcGccuccCCCCCGGc -3'
miRNA:   3'- -UGCU-GCUUGUGggCCUcCa----GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 88178 0.71 0.489201
Target:  5'- -aGACaGGAUAUCUGGAugaccaGGUCCUCCGGg -3'
miRNA:   3'- ugCUG-CUUGUGGGCCU------CCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 88433 0.66 0.782846
Target:  5'- gUGACGA--ACCCGGGGuuGUCCaggaugaaCCGGg -3'
miRNA:   3'- uGCUGCUugUGGGCCUC--CAGGg-------GGCC- -5'
5709 5' -60.3 NC_001806.1 + 88774 0.69 0.602746
Target:  5'- aACGugaACGGcCACCCGGuGGcCUUCCGGa -3'
miRNA:   3'- -UGC---UGCUuGUGGGCCuCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 89522 0.7 0.554541
Target:  5'- gGCGGCGAGCugCUGcGcGG-CgCCCCGGc -3'
miRNA:   3'- -UGCUGCUUGugGGC-CuCCaG-GGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 90334 0.68 0.651434
Target:  5'- cACGACGGG-GCUCGGGGGUaCCgCGGu -3'
miRNA:   3'- -UGCUGCUUgUGGGCCUCCAgGGgGCC- -5'
5709 5' -60.3 NC_001806.1 + 91457 0.77 0.21768
Target:  5'- cCGGCGAGCACCUGGccaugcuguguGGGUuuUCCCCGGc -3'
miRNA:   3'- uGCUGCUUGUGGGCC-----------UCCA--GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 93574 0.75 0.28635
Target:  5'- cGCGACGccguucGGCgGCCCGGGGG-CCCCgGGa -3'
miRNA:   3'- -UGCUGC------UUG-UGGGCCUCCaGGGGgCC- -5'
5709 5' -60.3 NC_001806.1 + 93638 0.71 0.480151
Target:  5'- cACGGgGAugACCCguuuggGGAGGggcCCCCCGa -3'
miRNA:   3'- -UGCUgCUugUGGG------CCUCCa--GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 94178 0.66 0.755973
Target:  5'- uGCGGCGucgucugaGGCcggGCCUGGAGG-CCCaggCCGGg -3'
miRNA:   3'- -UGCUGC--------UUG---UGGGCCUCCaGGG---GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.