miRNA display CGI


Results 101 - 120 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 95903 0.66 0.774001
Target:  5'- aACGugGGgcuccugccGCACCUgaaGGAGGagcUCgCCCGGu -3'
miRNA:   3'- -UGCugCU---------UGUGGG---CCUCC---AGgGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 100069 0.7 0.553587
Target:  5'- gGCGACGcuuucccGACcCCCGGAccccagGGUCUCCCGcGg -3'
miRNA:   3'- -UGCUGC-------UUGuGGGCCU------CCAGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 100736 0.67 0.690173
Target:  5'- cACGcCGGGCGCCC--AGGUgCgCCCGGa -3'
miRNA:   3'- -UGCuGCUUGUGGGccUCCAgG-GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 102047 0.7 0.526154
Target:  5'- uUGAUGGcccccgagucGgACCCGGAGG-CCCCaCGGg -3'
miRNA:   3'- uGCUGCU----------UgUGGGCCUCCaGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 102325 0.8 0.148434
Target:  5'- aACGugGGuacucGCGuCCCGGGGGacgUCCCCCGGg -3'
miRNA:   3'- -UGCugCU-----UGU-GGGCCUCC---AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 102945 0.77 0.238857
Target:  5'- cGCGACGGccAgACCCGGGGGcgccCCCCCGu -3'
miRNA:   3'- -UGCUGCU--UgUGGGCCUCCa---GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 103478 0.73 0.374092
Target:  5'- gGCGugGGAaaACCCGGGGGcuguugucggguggcUCCCgCCGGa -3'
miRNA:   3'- -UGCugCUUg-UGGGCCUCC---------------AGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 105739 0.67 0.699767
Target:  5'- aGCcACGGGC-CCCGuggguuagggacGGGGUCCCCCa- -3'
miRNA:   3'- -UGcUGCUUGuGGGC------------CUCCAGGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 106679 0.73 0.402761
Target:  5'- -gGACGAAaacccCCCGGGGGcucuucccgggCCCCCGGg -3'
miRNA:   3'- ugCUGCUUgu---GGGCCUCCa----------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 108710 0.73 0.386662
Target:  5'- cGCGACGu--GCUCGGGGGagaucaccCCCCCGGg -3'
miRNA:   3'- -UGCUGCuugUGGGCCUCCa-------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 109070 0.73 0.378774
Target:  5'- cCGAUaAACGCCCGcGGGGcCCCCgCGGa -3'
miRNA:   3'- uGCUGcUUGUGGGC-CUCCaGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 110086 0.7 0.554541
Target:  5'- gGCGACGuAACacgGCCCaGAGG-CCCCCu- -3'
miRNA:   3'- -UGCUGC-UUG---UGGGcCUCCaGGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 113283 0.87 0.052651
Target:  5'- gACGugGAGCugCCGGGGGgggacguUCCCCCGGc -3'
miRNA:   3'- -UGCugCUUGugGGCCUCC-------AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 114140 0.67 0.737549
Target:  5'- aAC-AUGGugGuCCCGGAGaucgCCCCCGGc -3'
miRNA:   3'- -UGcUGCUugU-GGGCCUCca--GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 120863 0.72 0.410968
Target:  5'- cCGGCGGcC-CCUGGcgccgccuGGUCCCCCGGg -3'
miRNA:   3'- uGCUGCUuGuGGGCCu-------CCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 121285 0.7 0.564108
Target:  5'- cACGcauACGGGCGgccaccccCCCGGAGGaaaCCCCCGa -3'
miRNA:   3'- -UGC---UGCUUGU--------GGGCCUCCa--GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 125829 0.69 0.593042
Target:  5'- uAUGGCGccuGACGCgCCGcGGG-CCCCCGGc -3'
miRNA:   3'- -UGCUGC---UUGUG-GGCcUCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 126473 0.68 0.641697
Target:  5'- aGCGuGCGAuacuucGCGCCCGGGcGcGUCCccggCCCGGa -3'
miRNA:   3'- -UGC-UGCU------UGUGGGCCU-C-CAGG----GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 126614 0.69 0.619286
Target:  5'- aGCGGCGuuguCUCGGAGGUgcuucuguuuggcgCCCCCGa -3'
miRNA:   3'- -UGCUGCuuguGGGCCUCCA--------------GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 127268 0.74 0.348316
Target:  5'- cCGGCGGACcCCCGGAGGcgccUgCCCCGc -3'
miRNA:   3'- uGCUGCUUGuGGGCCUCC----AgGGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.