miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 65641 0.67 0.737549
Target:  5'- -aGAgGGGC-CCCGGcGGccUCCCCCuGGg -3'
miRNA:   3'- ugCUgCUUGuGGGCCuCC--AGGGGG-CC- -5'
5709 5' -60.3 NC_001806.1 + 64954 0.7 0.526154
Target:  5'- cCGGCGucGGCGCCCGGgccGGGggUCCCGGg -3'
miRNA:   3'- uGCUGC--UUGUGGGCC---UCCagGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 60567 0.66 0.755973
Target:  5'- gACGACGAGgACCUcccccuGGaUCCCCGGg -3'
miRNA:   3'- -UGCUGCUUgUGGGccu---CCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 58553 0.68 0.680535
Target:  5'- -aGGCGcAACugaACgUCGGGGGUUCCCUGGg -3'
miRNA:   3'- ugCUGC-UUG---UG-GGCCUCCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 57984 0.66 0.791569
Target:  5'- -gGGC-AGCGCCaucGAGGUCUUCCGGa -3'
miRNA:   3'- ugCUGcUUGUGGgc-CUCCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 57011 0.66 0.77311
Target:  5'- gGCGGCGcccagugccaGGCacuggguggccggGCCCGGggccGGGgCCCCCGGc -3'
miRNA:   3'- -UGCUGC----------UUG-------------UGGGCC----UCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 56701 0.71 0.507535
Target:  5'- cCGG-GAAC-CCCGGgucgcucuGGGUCCUCCGGg -3'
miRNA:   3'- uGCUgCUUGuGGGCC--------UCCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 56518 0.7 0.564108
Target:  5'- aGCGGCaGGCccggGCCCGGc-GUUCCCCGGg -3'
miRNA:   3'- -UGCUGcUUG----UGGGCCucCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 56093 0.66 0.790702
Target:  5'- uAUGGCGAaaucaucACACaCCGGcGGUCUUCgGGa -3'
miRNA:   3'- -UGCUGCU-------UGUG-GGCCuCCAGGGGgCC- -5'
5709 5' -60.3 NC_001806.1 + 55786 0.66 0.78635
Target:  5'- cGCGGUGAucguGgGCCCGGuGGaggcaguuuccgagCCCCCGGa -3'
miRNA:   3'- -UGCUGCU----UgUGGGCCuCCa-------------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 55727 0.66 0.800161
Target:  5'- cUGGCGGcugACCCGGGGGaCCCCgaugUGGg -3'
miRNA:   3'- uGCUGCUug-UGGGCCUCCaGGGG----GCC- -5'
5709 5' -60.3 NC_001806.1 + 55312 0.71 0.507535
Target:  5'- gGCGcuguCGuACACCaGGA-GUCCCCCGGg -3'
miRNA:   3'- -UGCu---GCuUGUGGgCCUcCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 54099 0.71 0.489201
Target:  5'- gGCGGgGAGCcgaGCCCgcaugGGGGGUgUCCCGGg -3'
miRNA:   3'- -UGCUgCUUG---UGGG-----CCUCCAgGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 52696 0.66 0.755973
Target:  5'- cCG-CGucCACCCGGAGGU--UCCGGa -3'
miRNA:   3'- uGCuGCuuGUGGGCCUCCAggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 52544 0.7 0.526154
Target:  5'- gACGACGuGguCCgCGGGGccUCCCCCGGa -3'
miRNA:   3'- -UGCUGCuUguGG-GCCUCc-AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 52036 0.75 0.280028
Target:  5'- uCGGCGGcaGCCCGGAGGcgCCCgCGGa -3'
miRNA:   3'- uGCUGCUugUGGGCCUCCa-GGGgGCC- -5'
5709 5' -60.3 NC_001806.1 + 51024 0.66 0.800161
Target:  5'- aGCGGCGggUccguguuggGCCCGcGGGUCCgCgUGGu -3'
miRNA:   3'- -UGCUGCuuG---------UGGGCcUCCAGG-GgGCC- -5'
5709 5' -60.3 NC_001806.1 + 49401 0.66 0.76504
Target:  5'- uGCG-CGGuCGCCUGGAcgaugaugaugaGGUUCCCCGcGg -3'
miRNA:   3'- -UGCuGCUuGUGGGCCU------------CCAGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 46433 0.67 0.698809
Target:  5'- cGCGGuCGGGCGCCUGGcGG-CCaugcaugCCCGGa -3'
miRNA:   3'- -UGCU-GCUUGUGGGCCuCCaGG-------GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 46047 1.1 0.001364
Target:  5'- gACGACGAACACCCGGAGGUCCCCCGGa -3'
miRNA:   3'- -UGCUGCUUGUGGGCCUCCAGGGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.