Results 81 - 100 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5709 | 5' | -60.3 | NC_001806.1 | + | 43362 | 0.69 | 0.573717 |
Target: 5'- uCGAUG-ACGCCCuGGGGUCCCUgGa -3' miRNA: 3'- uGCUGCuUGUGGGcCUCCAGGGGgCc -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 41693 | 0.66 | 0.746807 |
Target: 5'- gGCGGCGugcCGCCCGccGuGUCcuCCCCGGg -3' miRNA: 3'- -UGCUGCuu-GUGGGCcuC-CAG--GGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 34307 | 0.68 | 0.652407 |
Target: 5'- aGCGGCGGggggcgGCGCgCCGGAcggGGcgcuggagauaacggCCCCCGGg -3' miRNA: 3'- -UGCUGCU------UGUG-GGCCU---CCa--------------GGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 33105 | 0.67 | 0.718793 |
Target: 5'- cCGGCGAGCGggUCCGGAcGGgg-CCCGGa -3' miRNA: 3'- uGCUGCUUGU--GGGCCU-CCaggGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 32951 | 0.71 | 0.47925 |
Target: 5'- uUGugGGGC-CCCGGgccggggccccuuGGGUCCgCCGGg -3' miRNA: 3'- uGCugCUUGuGGGCC-------------UCCAGGgGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 32294 | 0.66 | 0.76504 |
Target: 5'- cGCGugccagaGAuCACCCc--GGUCCCCCGGc -3' miRNA: 3'- -UGCug-----CUuGUGGGccuCCAGGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 30901 | 0.66 | 0.755973 |
Target: 5'- cACG-CGGAgACuuCCGGGGccGUCCCCgCGGg -3' miRNA: 3'- -UGCuGCUUgUG--GGCCUC--CAGGGG-GCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 30244 | 0.66 | 0.763235 |
Target: 5'- uGCGuGCGAGCgccgccuccgggGCCCGGcccccgcgccccGG-CCCCCGGg -3' miRNA: 3'- -UGC-UGCUUG------------UGGGCCu-----------CCaGGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 29957 | 0.66 | 0.76504 |
Target: 5'- cGCGAgcCGcGGCGCCgCGGGGGgcgucuggccCCUCCGGg -3' miRNA: 3'- -UGCU--GC-UUGUGG-GCCUCCa---------GGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 29161 | 0.66 | 0.774001 |
Target: 5'- cGCGAgGAAgACCCcggcaguugcGGGGGcgCCCCCc- -3' miRNA: 3'- -UGCUgCUUgUGGG----------CCUCCa-GGGGGcc -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 29122 | 0.66 | 0.791569 |
Target: 5'- gGCGugGAugGgggggcgguCUCGGGGGggagCCCCCc- -3' miRNA: 3'- -UGCugCUugU---------GGGCCUCCa---GGGGGcc -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 28520 | 0.67 | 0.737549 |
Target: 5'- -aGACGcAGgGCCCGG-GGUCgCCgUGGg -3' miRNA: 3'- ugCUGC-UUgUGGGCCuCCAG-GGgGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 28230 | 0.68 | 0.680535 |
Target: 5'- uUGGgGGGCGCCauguuGGGGGaCCCCCGa -3' miRNA: 3'- uGCUgCUUGUGGg----CCUCCaGGGGGCc -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 27816 | 0.69 | 0.622208 |
Target: 5'- aAUGAUauucuuuggGGGCGCCgGGuuGGUCCCCgGGg -3' miRNA: 3'- -UGCUG---------CUUGUGGgCCu-CCAGGGGgCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 26255 | 0.72 | 0.419278 |
Target: 5'- gGCGGCGGGCAgCCCGGGc--CCCCCGcGg -3' miRNA: 3'- -UGCUGCUUGU-GGGCCUccaGGGGGC-C- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 24788 | 0.76 | 0.259952 |
Target: 5'- gACGACGAcgGCCCGGGGGcCCugccgccggcgccgCCCGGg -3' miRNA: 3'- -UGCUGCUugUGGGCCUCCaGG--------------GGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 23940 | 0.73 | 0.386662 |
Target: 5'- gGCGGCGGG-GCCUGGGGGggCCgCCGGa -3' miRNA: 3'- -UGCUGCUUgUGGGCCUCCa-GGgGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 23772 | 0.66 | 0.782846 |
Target: 5'- gACGACGAuaaccccCACCCccacGGGG-CCgCCGGg -3' miRNA: 3'- -UGCUGCUu------GUGGGc---CUCCaGGgGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 23310 | 0.66 | 0.779322 |
Target: 5'- cCGGCccGGcCGCCCGGAGGcggcggcccgcgaCCCCCGa -3' miRNA: 3'- uGCUG--CUuGUGGGCCUCCa------------GGGGGCc -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 22638 | 0.66 | 0.76504 |
Target: 5'- -gGGCGAGCGCgCGGug--CCCgCCGGg -3' miRNA: 3'- ugCUGCUUGUGgGCCuccaGGG-GGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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