Results 81 - 100 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5709 | 5' | -60.3 | NC_001806.1 | + | 110086 | 0.7 | 0.554541 |
Target: 5'- gGCGACGuAACacgGCCCaGAGG-CCCCCu- -3' miRNA: 3'- -UGCUGC-UUG---UGGGcCUCCaGGGGGcc -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 56518 | 0.7 | 0.564108 |
Target: 5'- aGCGGCaGGCccggGCCCGGc-GUUCCCCGGg -3' miRNA: 3'- -UGCUGcUUG----UGGGCCucCAGGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 121285 | 0.7 | 0.564108 |
Target: 5'- cACGcauACGGGCGgccaccccCCCGGAGGaaaCCCCCGa -3' miRNA: 3'- -UGC---UGCUUGU--------GGGCCUCCa--GGGGGCc -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 136617 | 0.7 | 0.564108 |
Target: 5'- cACGuguCGAACACCCGcucGGcCaCCCCGGc -3' miRNA: 3'- -UGCu--GCUUGUGGGCcu-CCaG-GGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 19882 | 0.7 | 0.567946 |
Target: 5'- -aGGCGGAC-CgguggguuucugucgUCGGAGG-CCCCCGGg -3' miRNA: 3'- ugCUGCUUGuG---------------GGCCUCCaGGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 1440 | 0.69 | 0.573717 |
Target: 5'- -gGGCG-GCGCCggCGGcAGGgCCCCCGGg -3' miRNA: 3'- ugCUGCuUGUGG--GCC-UCCaGGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 43362 | 0.69 | 0.573717 |
Target: 5'- uCGAUG-ACGCCCuGGGGUCCCUgGa -3' miRNA: 3'- uGCUGCuUGUGGGcCUCCAGGGGgCc -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 13647 | 0.7 | 0.544075 |
Target: 5'- cGCGcCGGACcCCCGGAgggucggucagcuGGUCCaggaCCGGa -3' miRNA: 3'- -UGCuGCUUGuGGGCCU-------------CCAGGg---GGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 102047 | 0.7 | 0.526154 |
Target: 5'- uUGAUGGcccccgagucGgACCCGGAGG-CCCCaCGGg -3' miRNA: 3'- uGCUGCU----------UgUGGGCCUCCaGGGG-GCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 64954 | 0.7 | 0.526154 |
Target: 5'- cCGGCGucGGCGCCCGGgccGGGggUCCCGGg -3' miRNA: 3'- uGCUGC--UUGUGGGCC---UCCagGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 77520 | 0.72 | 0.4362 |
Target: 5'- uGCGagugaGCGGAgGCCCGG-GG-CCCCUGGu -3' miRNA: 3'- -UGC-----UGCUUgUGGGCCuCCaGGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 32951 | 0.71 | 0.47925 |
Target: 5'- uUGugGGGC-CCCGGgccggggccccuuGGGUCCgCCGGg -3' miRNA: 3'- uGCugCUUGuGGGCC-------------UCCAGGgGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 93638 | 0.71 | 0.480151 |
Target: 5'- cACGGgGAugACCCguuuggGGAGGggcCCCCCGa -3' miRNA: 3'- -UGCUgCUugUGGG------CCUCCa--GGGGGCc -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 54099 | 0.71 | 0.489201 |
Target: 5'- gGCGGgGAGCcgaGCCCgcaugGGGGGUgUCCCGGg -3' miRNA: 3'- -UGCUgCUUG---UGGG-----CCUCCAgGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 88178 | 0.71 | 0.489201 |
Target: 5'- -aGACaGGAUAUCUGGAugaccaGGUCCUCCGGg -3' miRNA: 3'- ugCUG-CUUGUGGGCCU------CCAGGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 55312 | 0.71 | 0.507535 |
Target: 5'- gGCGcuguCGuACACCaGGA-GUCCCCCGGg -3' miRNA: 3'- -UGCu---GCuUGUGGgCCUcCAGGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 21188 | 0.71 | 0.507535 |
Target: 5'- cGCGACGAGCG---GGGGG-CCCUCGGg -3' miRNA: 3'- -UGCUGCUUGUgggCCUCCaGGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 56701 | 0.71 | 0.507535 |
Target: 5'- cCGG-GAAC-CCCGGgucgcucuGGGUCCUCCGGg -3' miRNA: 3'- uGCUgCUUGuGGGCC--------UCCAGGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 80251 | 0.7 | 0.51588 |
Target: 5'- -gGGCGGuguuGCGCCCGGAGGcccgguuUCCCgCCGc -3' miRNA: 3'- ugCUGCU----UGUGGGCCUCC-------AGGG-GGCc -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 52544 | 0.7 | 0.526154 |
Target: 5'- gACGACGuGguCCgCGGGGccUCCCCCGGa -3' miRNA: 3'- -UGCUGCuUguGG-GCCUCc-AGGGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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