Results 121 - 130 of 130 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5709 | 5' | -60.3 | NC_001806.1 | + | 5583 | 0.7 | 0.545024 |
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Target: 5'- cCGACGccGGCACgCCGGGGG-CCCgUGGc -3' miRNA: 3'- uGCUGC--UUGUG-GGCCUCCaGGGgGCC- -5' |
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| 5709 | 5' | -60.3 | NC_001806.1 | + | 100069 | 0.7 | 0.553587 |
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Target: 5'- gGCGACGcuuucccGACcCCCGGAccccagGGUCUCCCGcGg -3' miRNA: 3'- -UGCUGC-------UUGuGGGCCU------CCAGGGGGC-C- -5' |
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| 5709 | 5' | -60.3 | NC_001806.1 | + | 89522 | 0.7 | 0.554541 |
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Target: 5'- gGCGGCGAGCugCUGcGcGG-CgCCCCGGc -3' miRNA: 3'- -UGCUGCUUGugGGC-CuCCaG-GGGGCC- -5' |
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| 5709 | 5' | -60.3 | NC_001806.1 | + | 110086 | 0.7 | 0.554541 |
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Target: 5'- gGCGACGuAACacgGCCCaGAGG-CCCCCu- -3' miRNA: 3'- -UGCUGC-UUG---UGGGcCUCCaGGGGGcc -5' |
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| 5709 | 5' | -60.3 | NC_001806.1 | + | 56518 | 0.7 | 0.564108 |
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Target: 5'- aGCGGCaGGCccggGCCCGGc-GUUCCCCGGg -3' miRNA: 3'- -UGCUGcUUG----UGGGCCucCAGGGGGCC- -5' |
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| 5709 | 5' | -60.3 | NC_001806.1 | + | 121285 | 0.7 | 0.564108 |
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Target: 5'- cACGcauACGGGCGgccaccccCCCGGAGGaaaCCCCCGa -3' miRNA: 3'- -UGC---UGCUUGU--------GGGCCUCCa--GGGGGCc -5' |
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| 5709 | 5' | -60.3 | NC_001806.1 | + | 136617 | 0.7 | 0.564108 |
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Target: 5'- cACGuguCGAACACCCGcucGGcCaCCCCGGc -3' miRNA: 3'- -UGCu--GCUUGUGGGCcu-CCaG-GGGGCC- -5' |
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| 5709 | 5' | -60.3 | NC_001806.1 | + | 19882 | 0.7 | 0.567946 |
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Target: 5'- -aGGCGGAC-CgguggguuucugucgUCGGAGG-CCCCCGGg -3' miRNA: 3'- ugCUGCUUGuG---------------GGCCUCCaGGGGGCC- -5' |
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| 5709 | 5' | -60.3 | NC_001806.1 | + | 1440 | 0.69 | 0.573717 |
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Target: 5'- -gGGCG-GCGCCggCGGcAGGgCCCCCGGg -3' miRNA: 3'- ugCUGCuUGUGG--GCC-UCCaGGGGGCC- -5' |
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| 5709 | 5' | -60.3 | NC_001806.1 | + | 90334 | 0.68 | 0.651434 |
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Target: 5'- cACGACGGG-GCUCGGGGGUaCCgCGGu -3' miRNA: 3'- -UGCUGCUUgUGGGCCUCCAgGGgGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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