miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 4444 0.77 0.238857
Target:  5'- gGCGGCGucCGCCCGGGGG-CUgCCGGc -3'
miRNA:   3'- -UGCUGCuuGUGGGCCUCCaGGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 102945 0.77 0.238857
Target:  5'- cGCGACGGccAgACCCGGGGGcgccCCCCCGu -3'
miRNA:   3'- -UGCUGCU--UgUGGGCCUCCa---GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 91457 0.77 0.21768
Target:  5'- cCGGCGAGCACCUGGccaugcuguguGGGUuuUCCCCGGc -3'
miRNA:   3'- uGCUGCUUGUGGGCC-----------UCCA--GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 102325 0.8 0.148434
Target:  5'- aACGugGGuacucGCGuCCCGGGGGacgUCCCCCGGg -3'
miRNA:   3'- -UGCugCU-----UGU-GGGCCUCC---AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 113283 0.87 0.052651
Target:  5'- gACGugGAGCugCCGGGGGgggacguUCCCCCGGc -3'
miRNA:   3'- -UGCugCUUGugGGCCUCC-------AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 109070 0.73 0.378774
Target:  5'- cCGAUaAACGCCCGcGGGGcCCCCgCGGa -3'
miRNA:   3'- uGCUGcUUGUGGGC-CUCCaGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 23940 0.73 0.386662
Target:  5'- gGCGGCGGG-GCCUGGGGGggCCgCCGGa -3'
miRNA:   3'- -UGCUGCUUgUGGGCCUCCa-GGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 93638 0.71 0.480151
Target:  5'- cACGGgGAugACCCguuuggGGAGGggcCCCCCGa -3'
miRNA:   3'- -UGCUgCUugUGGG------CCUCCa--GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 32951 0.71 0.47925
Target:  5'- uUGugGGGC-CCCGGgccggggccccuuGGGUCCgCCGGg -3'
miRNA:   3'- uGCugCUUGuGGGCC-------------UCCAGGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 77520 0.72 0.4362
Target:  5'- uGCGagugaGCGGAgGCCCGG-GG-CCCCUGGu -3'
miRNA:   3'- -UGC-----UGCUUgUGGGCCuCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 21276 0.72 0.4362
Target:  5'- uCGACG-ACGCCCggcgggacgGGAGGgCCCCCGcGg -3'
miRNA:   3'- uGCUGCuUGUGGG---------CCUCCaGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 22045 0.72 0.427689
Target:  5'- aGCGGgGAGCcgugGCCCGGcgccGGGcccccgCCCCCGGg -3'
miRNA:   3'- -UGCUgCUUG----UGGGCC----UCCa-----GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 26255 0.72 0.419278
Target:  5'- gGCGGCGGGCAgCCCGGGc--CCCCCGcGg -3'
miRNA:   3'- -UGCUGCUUGU-GGGCCUccaGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 120863 0.72 0.410968
Target:  5'- cCGGCGGcC-CCUGGcgccgccuGGUCCCCCGGg -3'
miRNA:   3'- uGCUGCUuGuGGGCCu-------CCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 106679 0.73 0.402761
Target:  5'- -gGACGAAaacccCCCGGGGGcucuucccgggCCCCCGGg -3'
miRNA:   3'- ugCUGCUUgu---GGGCCUCCa----------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 79543 0.73 0.394659
Target:  5'- cGCGGCcGGCGCCCGuGGG-CCCCCGc -3'
miRNA:   3'- -UGCUGcUUGUGGGCcUCCaGGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 6792 0.73 0.394659
Target:  5'- gGCGGCcaGAACcgccgugcacgACCCGGAGcGUCCCCUGc -3'
miRNA:   3'- -UGCUG--CUUG-----------UGGGCCUC-CAGGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 4361 0.73 0.394659
Target:  5'- uGCGgcccGCGGAgGCCgCGGGGGUCCucgccgccgCCCGGg -3'
miRNA:   3'- -UGC----UGCUUgUGG-GCCUCCAGG---------GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 10404 0.73 0.394659
Target:  5'- -aGGCGGGaGCCgGGGGGUCCCgCUGGc -3'
miRNA:   3'- ugCUGCUUgUGGgCCUCCAGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 108710 0.73 0.386662
Target:  5'- cGCGACGu--GCUCGGGGGagaucaccCCCCCGGg -3'
miRNA:   3'- -UGCUGCuugUGGGCCUCCa-------GGGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.