miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 65641 0.67 0.737549
Target:  5'- -aGAgGGGC-CCCGGcGGccUCCCCCuGGg -3'
miRNA:   3'- ugCUgCUUGuGGGCCuCC--AGGGGG-CC- -5'
5709 5' -60.3 NC_001806.1 + 28520 0.67 0.737549
Target:  5'- -aGACGcAGgGCCCGG-GGUCgCCgUGGg -3'
miRNA:   3'- ugCUGC-UUgUGGGCCuCCAG-GGgGCC- -5'
5709 5' -60.3 NC_001806.1 + 149691 0.67 0.736619
Target:  5'- cAUGGCGGccguuccaguguaAgGgUCGGGGGUCCCCCa- -3'
miRNA:   3'- -UGCUGCU-------------UgUgGGCCUCCAGGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 149651 0.67 0.728208
Target:  5'- cAUGGCGcccGGCuCCCguguaugaguGGGGGUCCCCCa- -3'
miRNA:   3'- -UGCUGC---UUGuGGG----------CCUCCAGGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 3646 0.67 0.725391
Target:  5'- gGCGGCGAcccccucgucaucuGCGCcggcgCCGGGGcUCCCCgCGGc -3'
miRNA:   3'- -UGCUGCU--------------UGUG-----GGCCUCcAGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 33105 0.67 0.718793
Target:  5'- cCGGCGAGCGggUCCGGAcGGgg-CCCGGa -3'
miRNA:   3'- uGCUGCUUGU--GGGCCU-CCaggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 144928 0.67 0.709309
Target:  5'- -aGAUGAACACUCGGGguuaccgccaacGGccggCCCCCGu -3'
miRNA:   3'- ugCUGCUUGUGGGCCU------------CCa---GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 17060 0.67 0.709309
Target:  5'- aACGACGGGC-CCCGG-GGUUUUaaGGa -3'
miRNA:   3'- -UGCUGCUUGuGGGCCuCCAGGGggCC- -5'
5709 5' -60.3 NC_001806.1 + 105739 0.67 0.699767
Target:  5'- aGCcACGGGC-CCCGuggguuagggacGGGGUCCCCCa- -3'
miRNA:   3'- -UGcUGCUUGuGGGC------------CUCCAGGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 46433 0.67 0.698809
Target:  5'- cGCGGuCGGGCGCCUGGcGG-CCaugcaugCCCGGa -3'
miRNA:   3'- -UGCU-GCUUGUGGGCCuCCaGG-------GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 5374 0.67 0.696894
Target:  5'- cGCGGCGAGCGucugacggucugucUCUGGcGGUCCCgcgUCGGg -3'
miRNA:   3'- -UGCUGCUUGU--------------GGGCCuCCAGGG---GGCC- -5'
5709 5' -60.3 NC_001806.1 + 100736 0.67 0.690173
Target:  5'- cACGcCGGGCGCCC--AGGUgCgCCCGGa -3'
miRNA:   3'- -UGCuGCUUGUGGGccUCCAgG-GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 72619 0.67 0.68921
Target:  5'- cGCGACGAcagggccuccgagACAuCCCGGGggacggccGGUCCgUCGGc -3'
miRNA:   3'- -UGCUGCU-------------UGU-GGGCCU--------CCAGGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 144873 0.67 0.68921
Target:  5'- cGCGACGcgaaaaaGGCccCCCGGAGGcUUUUCCGGg -3'
miRNA:   3'- -UGCUGC-------UUGu-GGGCCUCC-AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 71410 0.68 0.6815
Target:  5'- gACGACGAGaugauCCCGGAGGacaccgucgcgccaCCCaCGGa -3'
miRNA:   3'- -UGCUGCUUgu---GGGCCUCCag------------GGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 28230 0.68 0.680535
Target:  5'- uUGGgGGGCGCCauguuGGGGGaCCCCCGa -3'
miRNA:   3'- uGCUgCUUGUGGg----CCUCCaGGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 369 0.68 0.680535
Target:  5'- cGCGcGCGcGCGCCCGcGGGGgg-CCCGGg -3'
miRNA:   3'- -UGC-UGCuUGUGGGC-CUCCaggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 152079 0.68 0.680535
Target:  5'- cGCGcGCGcGCGCCCGcGGGGgg-CCCGGg -3'
miRNA:   3'- -UGC-UGCuUGUGGGC-CUCCaggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 70759 0.68 0.680535
Target:  5'- gGCGuCGAagcuGCugUCGGgagaccAGGUCCCCgGGu -3'
miRNA:   3'- -UGCuGCU----UGugGGCC------UCCAGGGGgCC- -5'
5709 5' -60.3 NC_001806.1 + 58553 0.68 0.680535
Target:  5'- -aGGCGcAACugaACgUCGGGGGUUCCCUGGg -3'
miRNA:   3'- ugCUGC-UUG---UG-GGCCUCCAGGGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.