miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5714 3' -54 NC_001806.1 + 9235 0.66 0.969325
Target:  5'- gGCGGGCGGucauguCGgggGGGUCcGcGUUCGUCg -3'
miRNA:   3'- -UGUCUGCUu-----GUa--CCCAGcC-CAAGCGG- -5'
5714 3' -54 NC_001806.1 + 143258 0.66 0.969325
Target:  5'- -gGGGgGGAUGUGGG-CGGGggUGCg -3'
miRNA:   3'- ugUCUgCUUGUACCCaGCCCaaGCGg -5'
5714 3' -54 NC_001806.1 + 5660 0.66 0.969325
Target:  5'- cAUGGGCGGggcGCGaGGG-CGGGUggguccgCGCCc -3'
miRNA:   3'- -UGUCUGCU---UGUaCCCaGCCCAa------GCGG- -5'
5714 3' -54 NC_001806.1 + 151052 0.66 0.969025
Target:  5'- -gGGGCGAgaagcgcacccgcGCggGGGUCGcGGgggUCGCg -3'
miRNA:   3'- ugUCUGCU-------------UGuaCCCAGC-CCa--AGCGg -5'
5714 3' -54 NC_001806.1 + 28425 0.66 0.966235
Target:  5'- uACAG--GGACcgGGGUCgcccuguuGGGggUCGCCa -3'
miRNA:   3'- -UGUCugCUUGuaCCCAG--------CCCa-AGCGG- -5'
5714 3' -54 NC_001806.1 + 147224 0.66 0.962933
Target:  5'- -gAGGCGGcccccGCggGGGUCGGG---GCCg -3'
miRNA:   3'- ugUCUGCU-----UGuaCCCAGCCCaagCGG- -5'
5714 3' -54 NC_001806.1 + 44775 0.66 0.962933
Target:  5'- cGCAGGgaaaucggcuCGGugA-GGGcCGGGggggUCGCCa -3'
miRNA:   3'- -UGUCU----------GCUugUaCCCaGCCCa---AGCGG- -5'
5714 3' -54 NC_001806.1 + 151297 0.66 0.962933
Target:  5'- -gGGGCGGcgGCgGUGGGcCGGGccucuggCGCCg -3'
miRNA:   3'- ugUCUGCU--UG-UACCCaGCCCaa-----GCGG- -5'
5714 3' -54 NC_001806.1 + 61537 0.66 0.959413
Target:  5'- cGCGGuCGGGCggGGGcUUGGcGUgccCGCCg -3'
miRNA:   3'- -UGUCuGCUUGuaCCC-AGCC-CAa--GCGG- -5'
5714 3' -54 NC_001806.1 + 29007 0.66 0.959413
Target:  5'- gGCGGAgacCGAA-GUGGGggggCGGGgggaCGCCg -3'
miRNA:   3'- -UGUCU---GCUUgUACCCa---GCCCaa--GCGG- -5'
5714 3' -54 NC_001806.1 + 106523 0.66 0.955668
Target:  5'- gACGGGgGAGC-UGGuGcUCGGGUgcgaUGCCg -3'
miRNA:   3'- -UGUCUgCUUGuACC-C-AGCCCAa---GCGG- -5'
5714 3' -54 NC_001806.1 + 72331 0.66 0.955668
Target:  5'- cCGGACGuACgGUGGG-CGGGa--GCCa -3'
miRNA:   3'- uGUCUGCuUG-UACCCaGCCCaagCGG- -5'
5714 3' -54 NC_001806.1 + 149876 0.67 0.951696
Target:  5'- cGCGGACGGA---GGGUCccuGGGggUCGCa -3'
miRNA:   3'- -UGUCUGCUUguaCCCAG---CCCa-AGCGg -5'
5714 3' -54 NC_001806.1 + 83265 0.67 0.951696
Target:  5'- gGCGGGCG-ACGgaggGGGuUCGGGcgggCGCg -3'
miRNA:   3'- -UGUCUGCuUGUa---CCC-AGCCCaa--GCGg -5'
5714 3' -54 NC_001806.1 + 147472 0.67 0.947493
Target:  5'- gACAGAgGcGGCGgagGGGagCGGGgcggCGCCg -3'
miRNA:   3'- -UGUCUgC-UUGUa--CCCa-GCCCaa--GCGG- -5'
5714 3' -54 NC_001806.1 + 71530 0.67 0.943054
Target:  5'- uGCGGGCGGGCGggGGGggGGGUggaaGaCCa -3'
miRNA:   3'- -UGUCUGCUUGUa-CCCagCCCAag--C-GG- -5'
5714 3' -54 NC_001806.1 + 22596 0.67 0.943054
Target:  5'- cGCAGAUG-ACGaggGGGUCGccgccgUCGCCg -3'
miRNA:   3'- -UGUCUGCuUGUa--CCCAGCcca---AGCGG- -5'
5714 3' -54 NC_001806.1 + 46825 0.67 0.942597
Target:  5'- gGguGGCgGGGgGUGGGUUGgacagccgcccucGGUUCGCCu -3'
miRNA:   3'- -UguCUG-CUUgUACCCAGC-------------CCAAGCGG- -5'
5714 3' -54 NC_001806.1 + 29693 0.67 0.938856
Target:  5'- -aGGGCGGGCcgGGGagGGGgcguaaccugaucgCGCCc -3'
miRNA:   3'- ugUCUGCUUGuaCCCagCCCaa------------GCGG- -5'
5714 3' -54 NC_001806.1 + 20907 0.68 0.922911
Target:  5'- cGCGGACGaAGCGcGGGagGGGgaUCgGCCg -3'
miRNA:   3'- -UGUCUGC-UUGUaCCCagCCCa-AG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.