miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5714 5' -59.6 NC_001806.1 + 20348 0.66 0.798265
Target:  5'- aGGcGGGcggCCCuugGgCCGCccgCCGUCCCg -3'
miRNA:   3'- aCCaCCCa--GGG---UgGGUGaa-GGCAGGG- -5'
5714 5' -59.6 NC_001806.1 + 82418 0.66 0.798265
Target:  5'- aGGgagaguagGGG-CCCGCCUcc--CCGUCCCc -3'
miRNA:   3'- aCCa-------CCCaGGGUGGGugaaGGCAGGG- -5'
5714 5' -59.6 NC_001806.1 + 119862 0.66 0.787731
Target:  5'- gGcGUGGGgcgggcgacgcgCCCGCCCuccGCUgCUGUCCUc -3'
miRNA:   3'- aC-CACCCa-----------GGGUGGG---UGAaGGCAGGG- -5'
5714 5' -59.6 NC_001806.1 + 19890 0.66 0.780602
Target:  5'- cGGUGGGUUUCugucgucggagGCCCcCggggUgCGUCCCc -3'
miRNA:   3'- aCCACCCAGGG-----------UGGGuGa---AgGCAGGG- -5'
5714 5' -59.6 NC_001806.1 + 90781 0.66 0.779706
Target:  5'- ---cGGGgagaaauuuaCCUACCCGCUUCCGUuuuuuaaCCCc -3'
miRNA:   3'- accaCCCa---------GGGUGGGUGAAGGCA-------GGG- -5'
5714 5' -59.6 NC_001806.1 + 23721 0.66 0.77158
Target:  5'- cGGUgcgccGGG-CCCGCCC-CcgCCG-CCCa -3'
miRNA:   3'- aCCA-----CCCaGGGUGGGuGaaGGCaGGG- -5'
5714 5' -59.6 NC_001806.1 + 41692 0.66 0.762441
Target:  5'- gGGcGGcGUgCCGCCCGCcgugUCC-UCCCc -3'
miRNA:   3'- aCCaCC-CAgGGUGGGUGa---AGGcAGGG- -5'
5714 5' -59.6 NC_001806.1 + 5848 0.66 0.762441
Target:  5'- cGGgccccccGGUCCCGCCCGCcggacgCCGggaCCa -3'
miRNA:   3'- aCCac-----CCAGGGUGGGUGaa----GGCag-GG- -5'
5714 5' -59.6 NC_001806.1 + 27457 0.66 0.753194
Target:  5'- aUGG-GcGGcCCCGgccgcccuuCCCGCUUCCGgcaauUCCCg -3'
miRNA:   3'- -ACCaC-CCaGGGU---------GGGUGAAGGC-----AGGG- -5'
5714 5' -59.6 NC_001806.1 + 139973 0.66 0.753194
Target:  5'- gGGUGGGacgCCCAUauguaCGCguaUCCGUUCg -3'
miRNA:   3'- aCCACCCa--GGGUGg----GUGa--AGGCAGGg -5'
5714 5' -59.6 NC_001806.1 + 20566 0.67 0.734408
Target:  5'- gGGcGGGgcgcggaCCCACCCGCccUCgCGcCCCg -3'
miRNA:   3'- aCCaCCCa------GGGUGGGUGa-AG-GCaGGG- -5'
5714 5' -59.6 NC_001806.1 + 38200 0.67 0.724886
Target:  5'- aGGaucguUGGGgCCCugCCGCU-CCGUCg- -3'
miRNA:   3'- aCC-----ACCCaGGGugGGUGAaGGCAGgg -5'
5714 5' -59.6 NC_001806.1 + 50272 0.67 0.724886
Target:  5'- cUGGccaccGGGgcccugCUCGCCCGCUUCaaUCCCg -3'
miRNA:   3'- -ACCa----CCCa-----GGGUGGGUGAAGgcAGGG- -5'
5714 5' -59.6 NC_001806.1 + 72716 0.67 0.716252
Target:  5'- cGGUggcccugaaGGGUacCCCACCCACggauccccccuccgCCGaCCCa -3'
miRNA:   3'- aCCA---------CCCA--GGGUGGGUGaa------------GGCaGGG- -5'
5714 5' -59.6 NC_001806.1 + 131784 0.67 0.715289
Target:  5'- gGGaGGGUCgCGCgCGCUuugcggaggucUCCGUCaCCg -3'
miRNA:   3'- aCCaCCCAGgGUGgGUGA-----------AGGCAG-GG- -5'
5714 5' -59.6 NC_001806.1 + 120014 0.67 0.715289
Target:  5'- aGGUGccccugCgCCACCCGCgccCCGUCCUg -3'
miRNA:   3'- aCCACcca---G-GGUGGGUGaa-GGCAGGG- -5'
5714 5' -59.6 NC_001806.1 + 55754 0.67 0.715289
Target:  5'- gUGG-GGGcCUCGCUCGCgUUCGUCaCCg -3'
miRNA:   3'- -ACCaCCCaGGGUGGGUGaAGGCAG-GG- -5'
5714 5' -59.6 NC_001806.1 + 116361 0.67 0.715289
Target:  5'- -cGUGGGcCUCACCCACg-CCGgcaCCg -3'
miRNA:   3'- acCACCCaGGGUGGGUGaaGGCag-GG- -5'
5714 5' -59.6 NC_001806.1 + 132560 0.67 0.705626
Target:  5'- cGGggGGGaCCCGuCCCguACUuugCCGUCCUg -3'
miRNA:   3'- aCCa-CCCaGGGU-GGG--UGAa--GGCAGGG- -5'
5714 5' -59.6 NC_001806.1 + 150665 0.67 0.696879
Target:  5'- uUGGccGGGcCCCGCCgCGCUggcggccgccgauggCCaGUCCCg -3'
miRNA:   3'- -ACCa-CCCaGGGUGG-GUGAa--------------GG-CAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.