miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5717 3' -55.7 NC_001806.1 + 47554 0.66 0.898931
Target:  5'- ---cGGCCACCCgcgACGGCC-UCGGGCu -3'
miRNA:   3'- guccUUGGUGGGa--UGCUGGuGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 21234 0.66 0.898931
Target:  5'- gCGGGGACgACCCcgaccACGACC-CC-GACc -3'
miRNA:   3'- -GUCCUUGgUGGGa----UGCUGGuGGuCUG- -5'
5717 3' -55.7 NC_001806.1 + 119449 0.66 0.898931
Target:  5'- gCAGGAcgucacccgccGCCACCCggucCGAgCgcggACCGGGCg -3'
miRNA:   3'- -GUCCU-----------UGGUGGGau--GCUgG----UGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 64945 0.66 0.898931
Target:  5'- gAGGGACCACCggcguCGGCgC-CCGGGCc -3'
miRNA:   3'- gUCCUUGGUGGgau--GCUG-GuGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 52457 0.66 0.898931
Target:  5'- -cGGGGCCGCCCU--GGCCG-CGGAUc -3'
miRNA:   3'- guCCUUGGUGGGAugCUGGUgGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 67740 0.66 0.893015
Target:  5'- -cGGAACCACCCaccccacagccaaacGCGGCUACCGc-- -3'
miRNA:   3'- guCCUUGGUGGGa--------------UGCUGGUGGUcug -5'
5717 3' -55.7 NC_001806.1 + 7281 0.66 0.892346
Target:  5'- cCGGGAGCCccggguUCC-GCGACCACCccgAGAa -3'
miRNA:   3'- -GUCCUUGGu-----GGGaUGCUGGUGG---UCUg -5'
5717 3' -55.7 NC_001806.1 + 76562 0.66 0.891675
Target:  5'- gCGGGAggugcugGCCGCgC-GCGAgCGCCGGGCc -3'
miRNA:   3'- -GUCCU-------UGGUGgGaUGCUgGUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 100481 0.67 0.888285
Target:  5'- uGGGcACCggucACCCUGCGGCgcggcagcgaucgaGCCGGGCg -3'
miRNA:   3'- gUCCuUGG----UGGGAUGCUGg-------------UGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 149348 0.67 0.885531
Target:  5'- uGGGGACCACgCCcccaacacgGCGACC-CCGGuCc -3'
miRNA:   3'- gUCCUUGGUG-GGa--------UGCUGGuGGUCuG- -5'
5717 3' -55.7 NC_001806.1 + 149423 0.67 0.878491
Target:  5'- aGGGggUC-CCacgGCGACC-CCGGGCc -3'
miRNA:   3'- gUCCuuGGuGGga-UGCUGGuGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 23803 0.67 0.878491
Target:  5'- cCGGGGGCCGccucuuuggccCCCUGCGcGCC-UCGGGCc -3'
miRNA:   3'- -GUCCUUGGU-----------GGGAUGC-UGGuGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 68518 0.67 0.878491
Target:  5'- aAGGAcACCAUCCUcGCGGUCACCGG-Cu -3'
miRNA:   3'- gUCCU-UGGUGGGA-UGCUGGUGGUCuG- -5'
5717 3' -55.7 NC_001806.1 + 113862 0.67 0.878491
Target:  5'- --uGGACCGCCaucGCGACUGCCGGGu -3'
miRNA:   3'- gucCUUGGUGGga-UGCUGGUGGUCUg -5'
5717 3' -55.7 NC_001806.1 + 150669 0.67 0.878491
Target:  5'- cCGGGccCCGCCgCgcugGCGGCCGCCGauGGCc -3'
miRNA:   3'- -GUCCuuGGUGG-Ga---UGCUGGUGGU--CUG- -5'
5717 3' -55.7 NC_001806.1 + 95184 0.67 0.871229
Target:  5'- gAGGcGCuCAUCCgcgcgugcUACGACCACCAccuGACg -3'
miRNA:   3'- gUCCuUG-GUGGG--------AUGCUGGUGGU---CUG- -5'
5717 3' -55.7 NC_001806.1 + 3141 0.67 0.871229
Target:  5'- -cGGGGCCcaggGCCC--CGGCgACCAGGCu -3'
miRNA:   3'- guCCUUGG----UGGGauGCUGgUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 4957 0.67 0.871229
Target:  5'- gCGGGGGCCcuCCCguc--CCGCCGGGCg -3'
miRNA:   3'- -GUCCUUGGu-GGGaugcuGGUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 58228 0.67 0.871229
Target:  5'- gAGGGugCcCCCgcCGACCugCAGuCg -3'
miRNA:   3'- gUCCUugGuGGGauGCUGGugGUCuG- -5'
5717 3' -55.7 NC_001806.1 + 12402 0.67 0.871229
Target:  5'- cCAGGcugguggcacaGACCcagagGCCC-ACGAgCACCAGGCc -3'
miRNA:   3'- -GUCC-----------UUGG-----UGGGaUGCUgGUGGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.