miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5719 3' -55 NC_001806.1 + 33993 0.66 0.927336
Target:  5'- gCCGGGGcagggGCGGgggcgUGGgc--GGGGGUg -3'
miRNA:   3'- -GGUCCCaa---CGCUa----ACCaagaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 30386 0.67 0.921915
Target:  5'- gCCGGGcGcgUGCGAcggUGGcgCgcggcucggGGGGGCc -3'
miRNA:   3'- -GGUCC-Ca-ACGCUa--ACCaaGa--------CCCCCG- -5'
5719 3' -55 NC_001806.1 + 59153 0.67 0.916256
Target:  5'- gCCGGGGUcucgggUGCGGgacgcGGa---GGGGGCg -3'
miRNA:   3'- -GGUCCCA------ACGCUaa---CCaagaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 144708 0.67 0.910358
Target:  5'- -uGGGGUUGCGGUUucuGUuucuuuaacccgUCUGGGGuGUu -3'
miRNA:   3'- ggUCCCAACGCUAAc--CA------------AGACCCC-CG- -5'
5719 3' -55 NC_001806.1 + 99723 0.67 0.904224
Target:  5'- gUAGGGg-GCGcugugUGGUg--GGGGGCg -3'
miRNA:   3'- gGUCCCaaCGCua---ACCAagaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 10387 0.67 0.904224
Target:  5'- cUCGGGGggGCGGggGGaggCgggagccgGGGGGUc -3'
miRNA:   3'- -GGUCCCaaCGCUaaCCaa-Ga-------CCCCCG- -5'
5719 3' -55 NC_001806.1 + 16839 0.67 0.897856
Target:  5'- gCuGGGUggUGUGGUgUGGgaaggUUUGGGGGUc -3'
miRNA:   3'- gGuCCCA--ACGCUA-ACCa----AGACCCCCG- -5'
5719 3' -55 NC_001806.1 + 28596 0.67 0.897856
Target:  5'- aCCGGGGUcGCcGUg----UUGGGGGCg -3'
miRNA:   3'- -GGUCCCAaCGcUAaccaaGACCCCCG- -5'
5719 3' -55 NC_001806.1 + 6076 0.67 0.897856
Target:  5'- cCCGGGG--GCGGgcccgGGcggCgGGGGGCg -3'
miRNA:   3'- -GGUCCCaaCGCUaa---CCaa-GaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 148182 0.68 0.891257
Target:  5'- -uGGGGggGCGcg-GGgcgUCcggcgGGGGGCg -3'
miRNA:   3'- ggUCCCaaCGCuaaCCa--AGa----CCCCCG- -5'
5719 3' -55 NC_001806.1 + 103709 0.68 0.891257
Target:  5'- -gGGGGUUuggucgGCGggUGGUaaCUGGcGGGCc -3'
miRNA:   3'- ggUCCCAA------CGCuaACCAa-GACC-CCCG- -5'
5719 3' -55 NC_001806.1 + 2794 0.68 0.88443
Target:  5'- cCCGGGGcgccGCGGgcUGGgc--GGGGGCg -3'
miRNA:   3'- -GGUCCCaa--CGCUa-ACCaagaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 14375 0.68 0.88443
Target:  5'- cCCAGGGggcugggGUGAggGGacaCUGGGGcGUg -3'
miRNA:   3'- -GGUCCCaa-----CGCUaaCCaa-GACCCC-CG- -5'
5719 3' -55 NC_001806.1 + 147620 0.68 0.878095
Target:  5'- gCCAGGGacgagUGCGAcUGGggcacacggcgcgcgUCcGcGGGGCg -3'
miRNA:   3'- -GGUCCCa----ACGCUaACCa--------------AGaC-CCCCG- -5'
5719 3' -55 NC_001806.1 + 40537 0.68 0.87738
Target:  5'- cCCGGGGggaaGCGAgauaGGUgg-GcGGGGCg -3'
miRNA:   3'- -GGUCCCaa--CGCUaa--CCAagaC-CCCCG- -5'
5719 3' -55 NC_001806.1 + 2832 0.68 0.873045
Target:  5'- cCCGGGGgcGUGGaggGGggCgcgggcgcggggagGGGGGCg -3'
miRNA:   3'- -GGUCCCaaCGCUaa-CCaaGa-------------CCCCCG- -5'
5719 3' -55 NC_001806.1 + 15061 0.68 0.870111
Target:  5'- -gGGGGUgucuucggGCGAcUGG-UCUcGGGGCg -3'
miRNA:   3'- ggUCCCAa-------CGCUaACCaAGAcCCCCG- -5'
5719 3' -55 NC_001806.1 + 98192 0.68 0.870111
Target:  5'- aCCAGGGcccguugGuCGAggGGcagCUGGGGGa -3'
miRNA:   3'- -GGUCCCaa-----C-GCUaaCCaa-GACCCCCg -5'
5719 3' -55 NC_001806.1 + 133148 0.68 0.862628
Target:  5'- gCGGGG--GCGAUgggGGUgcguUCUGGGGuGUc -3'
miRNA:   3'- gGUCCCaaCGCUAa--CCA----AGACCCC-CG- -5'
5719 3' -55 NC_001806.1 + 67968 0.68 0.862628
Target:  5'- gCGGGGUacucgcaacgccUGCGgg-GGUcCUGGaGGGCc -3'
miRNA:   3'- gGUCCCA------------ACGCuaaCCAaGACC-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.