miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5719 5' -56.5 NC_001806.1 + 99651 0.66 0.907213
Target:  5'- cGGGcCUGGCGGGCa---GGCAGCUg -3'
miRNA:   3'- cCCCaGGCUGUUUGguagCCGUCGGg -5'
5719 5' -56.5 NC_001806.1 + 55188 0.66 0.906607
Target:  5'- cGGGcGUcaccucgCCGAUAAucaGCCgcuggGUCGGCagcGGCCCg -3'
miRNA:   3'- -CCC-CA-------GGCUGUU---UGG-----UAGCCG---UCGGG- -5'
5719 5' -56.5 NC_001806.1 + 1676 0.66 0.901051
Target:  5'- --aGUCCGGCGcGCCgggcgccauggcGUCGGUGGUCCc -3'
miRNA:   3'- cccCAGGCUGUuUGG------------UAGCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 151281 0.66 0.901051
Target:  5'- uGGGGgCCGG--GGCCGgggggCGGCGGCg- -3'
miRNA:   3'- -CCCCaGGCUguUUGGUa----GCCGUCGgg -5'
5719 5' -56.5 NC_001806.1 + 150886 0.66 0.901051
Target:  5'- aGGGcCCGggcACGGGCC-UCGGgccccaggcaCGGCCCg -3'
miRNA:   3'- cCCCaGGC---UGUUUGGuAGCC----------GUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 32521 0.66 0.901051
Target:  5'- gGGGGUuacagcgacaCCGGCcGACCcccUGGCGGUCUu -3'
miRNA:   3'- -CCCCA----------GGCUGuUUGGua-GCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 127755 0.66 0.894664
Target:  5'- cGGGcugCCGgguGCGGGCCugUGGCGGCCg -3'
miRNA:   3'- cCCCa--GGC---UGUUUGGuaGCCGUCGGg -5'
5719 5' -56.5 NC_001806.1 + 128582 0.66 0.894664
Target:  5'- gGGaGGUCaCGGCGccGACCA-CGGCauacacGGCCa -3'
miRNA:   3'- -CC-CCAG-GCUGU--UUGGUaGCCG------UCGGg -5'
5719 5' -56.5 NC_001806.1 + 26930 0.66 0.894664
Target:  5'- cGGGUgCGcCAccuggugucugGGCC-UCGGCcGCCCg -3'
miRNA:   3'- cCCCAgGCuGU-----------UUGGuAGCCGuCGGG- -5'
5719 5' -56.5 NC_001806.1 + 43374 0.66 0.894664
Target:  5'- uGGGGUCCcugGACGAcacccgacGCC-UCGugaaGGCCCg -3'
miRNA:   3'- -CCCCAGG---CUGUU--------UGGuAGCcg--UCGGG- -5'
5719 5' -56.5 NC_001806.1 + 91404 0.66 0.894012
Target:  5'- cGGGUUCGAgGgucGGCCcaccgcgccccucGUCGGCGGaaCCCa -3'
miRNA:   3'- cCCCAGGCUgU---UUGG-------------UAGCCGUC--GGG- -5'
5719 5' -56.5 NC_001806.1 + 35106 0.66 0.893359
Target:  5'- cGGGGUuauaaaaggcgcgucCCGugGAcgcgGCCcUCGGUugggcgacgcaugccAGCCCa -3'
miRNA:   3'- -CCCCA---------------GGCugUU----UGGuAGCCG---------------UCGGG- -5'
5719 5' -56.5 NC_001806.1 + 46439 0.66 0.892704
Target:  5'- cGGGcGcCUGGC-GGCCAUgcaugcccggauggCGGCGGUCCa -3'
miRNA:   3'- -CCC-CaGGCUGuUUGGUA--------------GCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 27102 0.66 0.890724
Target:  5'- -cGGcCCGGCGAACUcgGUCuaacguuacacccgaGGCGGCCUg -3'
miRNA:   3'- ccCCaGGCUGUUUGG--UAG---------------CCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 113296 0.66 0.888053
Target:  5'- cGGGGgggGACGuuCCccCGGCcGGCCCg -3'
miRNA:   3'- -CCCCaggCUGUuuGGuaGCCG-UCGGG- -5'
5719 5' -56.5 NC_001806.1 + 66514 0.66 0.888053
Target:  5'- cGGGGUuuGG-GGAUUggCGGCcaGGCCCg -3'
miRNA:   3'- -CCCCAggCUgUUUGGuaGCCG--UCGGG- -5'
5719 5' -56.5 NC_001806.1 + 68574 0.66 0.888053
Target:  5'- -cGG-CCuGCGcACCG-CGGCGGCCCu -3'
miRNA:   3'- ccCCaGGcUGUuUGGUaGCCGUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 9253 0.66 0.888053
Target:  5'- gGGGGUCCG-CGu-UCGUCGGaaaucgcgauUAGCUCg -3'
miRNA:   3'- -CCCCAGGCuGUuuGGUAGCC----------GUCGGG- -5'
5719 5' -56.5 NC_001806.1 + 101312 0.66 0.888053
Target:  5'- aGGGGcuccuccaUCCGGucuccCGGGgCAUCGGCuGCCa -3'
miRNA:   3'- -CCCC--------AGGCU-----GUUUgGUAGCCGuCGGg -5'
5719 5' -56.5 NC_001806.1 + 136969 0.67 0.881223
Target:  5'- gGGGGcCCG-CGAGCguggugcgguCAUggCGGCGGCCg -3'
miRNA:   3'- -CCCCaGGCuGUUUG----------GUA--GCCGUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.