miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5720 3' -56.4 NC_001806.1 + 86056 0.66 0.917927
Target:  5'- gGCUCGUCcccUGGggcggCGGCGUCuagcucgcGGAGGGc -3'
miRNA:   3'- -UGGGCAG---ACCaga--GCCGCAG--------UUUCCC- -5'
5720 3' -56.4 NC_001806.1 + 65761 0.66 0.917927
Target:  5'- gACgCGgcgGGUUUCGGCGggcUCgAGAGGGg -3'
miRNA:   3'- -UGgGCagaCCAGAGCCGC---AG-UUUCCC- -5'
5720 3' -56.4 NC_001806.1 + 22652 0.66 0.917927
Target:  5'- uGCCCGcCgGGUa-CGGCGcCGcGGGGa -3'
miRNA:   3'- -UGGGCaGaCCAgaGCCGCaGUuUCCC- -5'
5720 3' -56.4 NC_001806.1 + 4432 0.66 0.917927
Target:  5'- gGCCCGggcgGGgg-CGGCGUCcgcccGGGGg -3'
miRNA:   3'- -UGGGCaga-CCagaGCCGCAGuu---UCCC- -5'
5720 3' -56.4 NC_001806.1 + 151065 0.66 0.912182
Target:  5'- cACCCGcgCgggGGUCgcgGGgGUCGcGGGGg -3'
miRNA:   3'- -UGGGCa-Ga--CCAGag-CCgCAGUuUCCC- -5'
5720 3' -56.4 NC_001806.1 + 135671 0.66 0.912182
Target:  5'- gGCCCGcgUUGGUCUCgcgcaGGCGcUCGAuGGu -3'
miRNA:   3'- -UGGGCa-GACCAGAG-----CCGC-AGUUuCCc -5'
5720 3' -56.4 NC_001806.1 + 85983 0.66 0.906206
Target:  5'- uCCCGgggGGUCggcaggcgaCGGCGUCucccGGGGg -3'
miRNA:   3'- uGGGCagaCCAGa--------GCCGCAGuu--UCCC- -5'
5720 3' -56.4 NC_001806.1 + 144976 0.66 0.893573
Target:  5'- gGCCCGg--GGcCcCGGCGgaccCAAGGGGc -3'
miRNA:   3'- -UGGGCagaCCaGaGCCGCa---GUUUCCC- -5'
5720 3' -56.4 NC_001806.1 + 54923 0.67 0.88692
Target:  5'- aACCCGUCggGGUgCUCGuGCGUCu----- -3'
miRNA:   3'- -UGGGCAGa-CCA-GAGC-CGCAGuuuccc -5'
5720 3' -56.4 NC_001806.1 + 82726 0.67 0.88692
Target:  5'- gUCCGg--GGUCUgcggggcggCGGCGUCGucGGGc -3'
miRNA:   3'- uGGGCagaCCAGA---------GCCGCAGUuuCCC- -5'
5720 3' -56.4 NC_001806.1 + 132737 0.67 0.865668
Target:  5'- gGCCCGgcgUGGcCUCGGCGgCAGccGGa -3'
miRNA:   3'- -UGGGCag-ACCaGAGCCGCaGUUucCC- -5'
5720 3' -56.4 NC_001806.1 + 151669 0.68 0.842579
Target:  5'- uGCCUGUCUaacucgcuaGUCUCGGC--CGGGGGGg -3'
miRNA:   3'- -UGGGCAGAc--------CAGAGCCGcaGUUUCCC- -5'
5720 3' -56.4 NC_001806.1 + 113622 0.68 0.834502
Target:  5'- uACUCG-CUGGUCUCGuaCGUCGugaccuaccucGGGGGa -3'
miRNA:   3'- -UGGGCaGACCAGAGCc-GCAGU-----------UUCCC- -5'
5720 3' -56.4 NC_001806.1 + 5067 0.68 0.809227
Target:  5'- cGCUCGUCgcGGUCUgGGC-UCGGGGuGGg -3'
miRNA:   3'- -UGGGCAGa-CCAGAgCCGcAGUUUC-CC- -5'
5720 3' -56.4 NC_001806.1 + 20376 0.7 0.742306
Target:  5'- uCCCG-UUGGUCcCGGCGUCcggcgggcgggaccGGGGGGc -3'
miRNA:   3'- uGGGCaGACCAGaGCCGCAG--------------UUUCCC- -5'
5720 3' -56.4 NC_001806.1 + 143234 0.7 0.72588
Target:  5'- aACCCGUgCUGGUggugCGG-GUUggGGGGg -3'
miRNA:   3'- -UGGGCA-GACCAga--GCCgCAGuuUCCC- -5'
5720 3' -56.4 NC_001806.1 + 37562 1.09 0.002925
Target:  5'- gACCCGUCUGGUCUCGGCGUCAAAGGGc -3'
miRNA:   3'- -UGGGCAGACCAGAGCCGCAGUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.