miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5720 5' -67.7 NC_001806.1 + 84459 0.66 0.438744
Target:  5'- aGCCUGCUucgGGC-CgCGGGGCCCgAGGc- -3'
miRNA:   3'- cCGGGCGG---UCGuG-GCCCCGGG-UCCcc -5'
5720 5' -67.7 NC_001806.1 + 27064 0.66 0.438744
Target:  5'- gGGCCCgagGCCcGUGCCcGGGCCCuGGc- -3'
miRNA:   3'- -CCGGG---CGGuCGUGGcCCCGGGuCCcc -5'
5720 5' -67.7 NC_001806.1 + 95280 0.66 0.438744
Target:  5'- cGCgUGCUGGCGCgcaUGGGGgCgGGGGGc -3'
miRNA:   3'- cCGgGCGGUCGUG---GCCCCgGgUCCCC- -5'
5720 5' -67.7 NC_001806.1 + 28505 0.66 0.438744
Target:  5'- uGGCCCcuuugacUCAGaCGCa-GGGCCCGGGGu -3'
miRNA:   3'- -CCGGGc------GGUC-GUGgcCCCGGGUCCCc -5'
5720 5' -67.7 NC_001806.1 + 85940 0.66 0.437914
Target:  5'- cGGCCaGCuCGGaCACCagcagcuugcGGGGCuuggacgcgccucCCGGGGGg -3'
miRNA:   3'- -CCGGgCG-GUC-GUGG----------CCCCG-------------GGUCCCC- -5'
5720 5' -67.7 NC_001806.1 + 62204 0.66 0.437914
Target:  5'- aGGUCCGCCGucGCGCUcugguccguaaGGGCCgucagagCGGGGGa -3'
miRNA:   3'- -CCGGGCGGU--CGUGGc----------CCCGG-------GUCCCC- -5'
5720 5' -67.7 NC_001806.1 + 9732 0.66 0.430487
Target:  5'- cGGCCCccaucaccGCCccuaaccgcagGGCGCCguggguugGGGGCgCguGGGGa -3'
miRNA:   3'- -CCGGG--------CGG-----------UCGUGG--------CCCCG-GguCCCC- -5'
5720 5' -67.7 NC_001806.1 + 59143 0.66 0.430487
Target:  5'- gGGCa-GCCGG-GCCGGGGUCUcGGGu -3'
miRNA:   3'- -CCGggCGGUCgUGGCCCCGGGuCCCc -5'
5720 5' -67.7 NC_001806.1 + 77089 0.66 0.430487
Target:  5'- -uCCCGCCAaGUACCaGGGcGUCCuGGGn -3'
miRNA:   3'- ccGGGCGGU-CGUGG-CCC-CGGGuCCCc -5'
5720 5' -67.7 NC_001806.1 + 74885 0.66 0.428028
Target:  5'- gGGCCUcccuGCCGGCggGCUGGucggaccuccccgaGGCCguuCGGGGGg -3'
miRNA:   3'- -CCGGG----CGGUCG--UGGCC--------------CCGG---GUCCCC- -5'
5720 5' -67.7 NC_001806.1 + 115117 0.66 0.422323
Target:  5'- gGGUgCGCCcaGGUGCCGcGGcGCgCAGGGa -3'
miRNA:   3'- -CCGgGCGG--UCGUGGC-CC-CGgGUCCCc -5'
5720 5' -67.7 NC_001806.1 + 15848 0.66 0.422323
Target:  5'- gGGCCC-CUu---UUGGGGCCgCGGGGGg -3'
miRNA:   3'- -CCGGGcGGucguGGCCCCGG-GUCCCC- -5'
5720 5' -67.7 NC_001806.1 + 24333 0.66 0.422323
Target:  5'- uGCUgGCCucGgGCCGcguguucGGCCCGGGGGu -3'
miRNA:   3'- cCGGgCGGu-CgUGGCc------CCGGGUCCCC- -5'
5720 5' -67.7 NC_001806.1 + 5922 0.66 0.422323
Target:  5'- cGCCCccccauugGCCGGCgGgCGGGaccGCCCcaAGGGGg -3'
miRNA:   3'- cCGGG--------CGGUCG-UgGCCC---CGGG--UCCCC- -5'
5720 5' -67.7 NC_001806.1 + 96306 0.66 0.419892
Target:  5'- cGGUCCuCCAGCACCuc-GCCCccaggcuaccugacGGGGGg -3'
miRNA:   3'- -CCGGGcGGUCGUGGcccCGGG--------------UCCCC- -5'
5720 5' -67.7 NC_001806.1 + 3821 0.66 0.419083
Target:  5'- aGGCCCcaGCCgaAGCgGCCGGccgccauggcguaGCCCAGGuGGg -3'
miRNA:   3'- -CCGGG--CGG--UCG-UGGCCc------------CGGGUCC-CC- -5'
5720 5' -67.7 NC_001806.1 + 70051 0.66 0.414252
Target:  5'- cGCCCuGCguGUguugGCCuGGGCCCGGGa- -3'
miRNA:   3'- cCGGG-CGguCG----UGGcCCCGGGUCCcc -5'
5720 5' -67.7 NC_001806.1 + 121522 0.66 0.414252
Target:  5'- gGGCCCGCCaucugggauGGCucCUGGccaGGaucaccaaccaCCCGGGGGg -3'
miRNA:   3'- -CCGGGCGG---------UCGu-GGCC---CC-----------GGGUCCCC- -5'
5720 5' -67.7 NC_001806.1 + 22746 0.66 0.41345
Target:  5'- cGCCCGCCAcgccgacGCcgacgacgacGCCGGGcgccgcGCCCAGGccGGc -3'
miRNA:   3'- cCGGGCGGU-------CG----------UGGCCC------CGGGUCC--CC- -5'
5720 5' -67.7 NC_001806.1 + 33348 0.66 0.406277
Target:  5'- uGGCCgCcCCGGCugCaggGGGGCCCGGa-- -3'
miRNA:   3'- -CCGG-GcGGUCGugG---CCCCGGGUCccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.