miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5721 3' -52.4 NC_001806.1 + 21655 0.66 0.989567
Target:  5'- gUCGGACUCcGGGuccuCGUCCUc-GUCGUc -3'
miRNA:   3'- -GGCCUGGGuCUCu---GCAGGAauUAGCA- -5'
5721 3' -52.4 NC_001806.1 + 7851 0.66 0.989567
Target:  5'- uCCGGGCCaaccaAGAGACGUCg-------- -3'
miRNA:   3'- -GGCCUGGg----UCUCUGCAGgaauuagca -5'
5721 3' -52.4 NC_001806.1 + 16699 0.66 0.988161
Target:  5'- uCCGGAuaggccacgucgUCCGG-GGCGUCCUc-GUCGa -3'
miRNA:   3'- -GGCCU------------GGGUCuCUGCAGGAauUAGCa -5'
5721 3' -52.4 NC_001806.1 + 23314 0.66 0.986612
Target:  5'- cCCGGccGCCCGGAGGCGgcggCCcg---CGa -3'
miRNA:   3'- -GGCC--UGGGUCUCUGCa---GGaauuaGCa -5'
5721 3' -52.4 NC_001806.1 + 74071 0.66 0.986612
Target:  5'- gCGGACCCAGGccCGUCgggcGAUCGa -3'
miRNA:   3'- gGCCUGGGUCUcuGCAGgaa-UUAGCa -5'
5721 3' -52.4 NC_001806.1 + 6070 0.66 0.984912
Target:  5'- gCCGGcCCCGGGGGCGggcCCggg--CGg -3'
miRNA:   3'- -GGCCuGGGUCUCUGCa--GGaauuaGCa -5'
5721 3' -52.4 NC_001806.1 + 22119 0.66 0.983052
Target:  5'- cCCGGGCCUcugGGGGGCGcCCgagg-CGg -3'
miRNA:   3'- -GGCCUGGG---UCUCUGCaGGaauuaGCa -5'
5721 3' -52.4 NC_001806.1 + 106704 0.66 0.983052
Target:  5'- cCCGGGCCCccGGGCGgcccCCgguAUCGg -3'
miRNA:   3'- -GGCCUGGGucUCUGCa---GGaauUAGCa -5'
5721 3' -52.4 NC_001806.1 + 127271 0.66 0.983052
Target:  5'- gCGGACCCccGGAGGCG-CCUgcccCGc -3'
miRNA:   3'- gGCCUGGG--UCUCUGCaGGAauuaGCa -5'
5721 3' -52.4 NC_001806.1 + 52039 0.66 0.983052
Target:  5'- gCGGcaGCCCGGAGGCGcCCgcggAAaCGUu -3'
miRNA:   3'- gGCC--UGGGUCUCUGCaGGaa--UUaGCA- -5'
5721 3' -52.4 NC_001806.1 + 38408 0.66 0.983052
Target:  5'- gCCGG-CUCGGGGGgGUCCUcguccaGAUCGc -3'
miRNA:   3'- -GGCCuGGGUCUCUgCAGGAa-----UUAGCa -5'
5721 3' -52.4 NC_001806.1 + 72511 0.66 0.981025
Target:  5'- gCGGGCCUGGGGGaGcCCUgcGUCGg -3'
miRNA:   3'- gGCCUGGGUCUCUgCaGGAauUAGCa -5'
5721 3' -52.4 NC_001806.1 + 92980 0.66 0.981025
Target:  5'- uCCGGGCgCGuGGACGUCCaUGuUCGc -3'
miRNA:   3'- -GGCCUGgGUcUCUGCAGGaAUuAGCa -5'
5721 3' -52.4 NC_001806.1 + 40260 0.67 0.978821
Target:  5'- -aGGACCCAGu--CGUCCUUAcugaCGg -3'
miRNA:   3'- ggCCUGGGUCucuGCAGGAAUua--GCa -5'
5721 3' -52.4 NC_001806.1 + 15962 0.67 0.978821
Target:  5'- gCCaGGACUCGGGGGCGUUggu-GUCGa -3'
miRNA:   3'- -GG-CCUGGGUCUCUGCAGgaauUAGCa -5'
5721 3' -52.4 NC_001806.1 + 57039 0.67 0.978359
Target:  5'- gCCGGGCCCGGGGcCGgggCCcccggcugCGUg -3'
miRNA:   3'- -GGCCUGGGUCUCuGCa--GGaauua---GCA- -5'
5721 3' -52.4 NC_001806.1 + 91816 0.67 0.976433
Target:  5'- gCCGGACCaucaugcaGGAGACGUaCCgcg--CGg -3'
miRNA:   3'- -GGCCUGGg-------UCUCUGCA-GGaauuaGCa -5'
5721 3' -52.4 NC_001806.1 + 60615 0.67 0.973854
Target:  5'- cCCGGcCCCAG-GuCGUCCUcc-UCGg -3'
miRNA:   3'- -GGCCuGGGUCuCuGCAGGAauuAGCa -5'
5721 3' -52.4 NC_001806.1 + 68393 0.67 0.968091
Target:  5'- aCCGGGCCCacgggcuuccGGAGACGgcgCuCUUGGcCGa -3'
miRNA:   3'- -GGCCUGGG----------UCUCUGCa--G-GAAUUaGCa -5'
5721 3' -52.4 NC_001806.1 + 80022 0.67 0.968091
Target:  5'- gCGGGCCgCAGcGGCG-CCUUAcgCGc -3'
miRNA:   3'- gGCCUGG-GUCuCUGCaGGAAUuaGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.