miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5721 5' -61.8 NC_001806.1 + 50725 0.66 0.640544
Target:  5'- cAGCGGCUGCugggcuuuGCcgACACCGUGGUgGCGu -3'
miRNA:   3'- uUUGCCGGCG--------CG--UGUGGCGUCGgCGU- -5'
5721 5' -61.8 NC_001806.1 + 102834 0.66 0.640544
Target:  5'- cGACGaGCCG-GuCGCcCCGCGGcCCGCGu -3'
miRNA:   3'- uUUGC-CGGCgC-GUGuGGCGUC-GGCGU- -5'
5721 5' -61.8 NC_001806.1 + 129132 0.66 0.640544
Target:  5'- aAAACuaCCGCGCugAuCCGCuGGCUGCGg -3'
miRNA:   3'- -UUUGccGGCGCGugU-GGCG-UCGGCGU- -5'
5721 5' -61.8 NC_001806.1 + 122894 0.66 0.640544
Target:  5'- aGAGCGGCgaGUGCuCGCaGCAGUCGUg -3'
miRNA:   3'- -UUUGCCGg-CGCGuGUGgCGUCGGCGu -5'
5721 5' -61.8 NC_001806.1 + 70187 0.66 0.630543
Target:  5'- cAGAUGGCCGacaACAUagaGCAGCUGCu -3'
miRNA:   3'- -UUUGCCGGCgcgUGUGg--CGUCGGCGu -5'
5721 5' -61.8 NC_001806.1 + 36190 0.66 0.630543
Target:  5'- uGACGcgucgaugcucuGCCGCGCGgGCgGCcauGCCGCu -3'
miRNA:   3'- uUUGC------------CGGCGCGUgUGgCGu--CGGCGu -5'
5721 5' -61.8 NC_001806.1 + 53862 0.66 0.630543
Target:  5'- cGACGGCgGCcaGCugUuugGCAGCCGCGc -3'
miRNA:   3'- uUUGCCGgCGcgUGugG---CGUCGGCGU- -5'
5721 5' -61.8 NC_001806.1 + 99945 0.66 0.630543
Target:  5'- uGGCgGGCCGCGCGCcgggagucgACCccgcGCGGCgCGCc -3'
miRNA:   3'- uUUG-CCGGCGCGUG---------UGG----CGUCG-GCGu -5'
5721 5' -61.8 NC_001806.1 + 120128 0.66 0.630543
Target:  5'- ---gGGCCGCGCuuCAggGCGGcCCGCGa -3'
miRNA:   3'- uuugCCGGCGCGu-GUggCGUC-GGCGU- -5'
5721 5' -61.8 NC_001806.1 + 77121 0.66 0.620543
Target:  5'- aGAGC-GCCGaGCGgGCCGgGGCCGUg -3'
miRNA:   3'- -UUUGcCGGCgCGUgUGGCgUCGGCGu -5'
5721 5' -61.8 NC_001806.1 + 7560 0.66 0.620543
Target:  5'- ---gGGcCCGCGUcgggauccACACCGCGGuUCGCGu -3'
miRNA:   3'- uuugCC-GGCGCG--------UGUGGCGUC-GGCGU- -5'
5721 5' -61.8 NC_001806.1 + 6174 0.66 0.620543
Target:  5'- gGAGCGGCUGCGgaGCA-CGCGGaCCGgGa -3'
miRNA:   3'- -UUUGCCGGCGCg-UGUgGCGUC-GGCgU- -5'
5721 5' -61.8 NC_001806.1 + 50150 0.66 0.620543
Target:  5'- --cCGGCCcCG-ACGCCGCGGuguuCCGCAg -3'
miRNA:   3'- uuuGCCGGcGCgUGUGGCGUC----GGCGU- -5'
5721 5' -61.8 NC_001806.1 + 81356 0.66 0.619543
Target:  5'- cAGGCGGCCgggGCGuCGC-CCGCgaacauaGGCUGCGg -3'
miRNA:   3'- -UUUGCCGG---CGC-GUGuGGCG-------UCGGCGU- -5'
5721 5' -61.8 NC_001806.1 + 23469 0.66 0.617544
Target:  5'- cGGGCcGCCGCgGCGCAggcccgcccgcgccCCGUGGCCGUg -3'
miRNA:   3'- -UUUGcCGGCG-CGUGU--------------GGCGUCGGCGu -5'
5721 5' -61.8 NC_001806.1 + 4305 0.66 0.610551
Target:  5'- gAAGCGGCC-CGUgGCGUCGCGGCCGg- -3'
miRNA:   3'- -UUUGCCGGcGCG-UGUGGCGUCGGCgu -5'
5721 5' -61.8 NC_001806.1 + 21330 0.66 0.610551
Target:  5'- aGGAC-GCCGgGgACGCCGUcucGCCGCGa -3'
miRNA:   3'- -UUUGcCGGCgCgUGUGGCGu--CGGCGU- -5'
5721 5' -61.8 NC_001806.1 + 32225 0.66 0.610551
Target:  5'- ---aGGCaCGCGCACcCgCGCGGCCa-- -3'
miRNA:   3'- uuugCCG-GCGCGUGuG-GCGUCGGcgu -5'
5721 5' -61.8 NC_001806.1 + 31105 0.66 0.610551
Target:  5'- ---gGGCCGCGguCcccgGCUGgAGCCGCc -3'
miRNA:   3'- uuugCCGGCGCguG----UGGCgUCGGCGu -5'
5721 5' -61.8 NC_001806.1 + 2007 0.66 0.610551
Target:  5'- uAGGCGuGCUGcCGCgACACCGCGGgcCCGUc -3'
miRNA:   3'- -UUUGC-CGGC-GCG-UGUGGCGUC--GGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.