miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5722 3' -53.5 NC_001806.1 + 100383 0.66 0.98017
Target:  5'- --cCG-UCG-CCGGGCGGCgCGggggCCGGg -3'
miRNA:   3'- caaGCaAGCuGGCUUGUCG-GCa---GGCC- -5'
5722 3' -53.5 NC_001806.1 + 4855 0.66 0.98017
Target:  5'- -gUCGggaUCGuCCGGACGGCC-UCCu- -3'
miRNA:   3'- caAGCa--AGCuGGCUUGUCGGcAGGcc -5'
5722 3' -53.5 NC_001806.1 + 18322 0.66 0.977923
Target:  5'- -gUCGgggCGACCGGACucaCGgCCGGa -3'
miRNA:   3'- caAGCaa-GCUGGCUUGucgGCaGGCC- -5'
5722 3' -53.5 NC_001806.1 + 54655 0.66 0.977923
Target:  5'- --cCGUaaCGGCCGAcuUAGCCG-CCGGu -3'
miRNA:   3'- caaGCAa-GCUGGCUu-GUCGGCaGGCC- -5'
5722 3' -53.5 NC_001806.1 + 10032 0.66 0.977688
Target:  5'- -----cUCGGCCGAACAGCgCGgugggggguuuguUCUGGa -3'
miRNA:   3'- caagcaAGCUGGCUUGUCG-GC-------------AGGCC- -5'
5722 3' -53.5 NC_001806.1 + 22097 0.66 0.975493
Target:  5'- --aCGg-CGGCCugggcGACAGCCGcCCGGg -3'
miRNA:   3'- caaGCaaGCUGGc----UUGUCGGCaGGCC- -5'
5722 3' -53.5 NC_001806.1 + 47955 0.66 0.975493
Target:  5'- uGUUCG-UCaACgGAGCGcucaCCGUCCGGg -3'
miRNA:   3'- -CAAGCaAGcUGgCUUGUc---GGCAGGCC- -5'
5722 3' -53.5 NC_001806.1 + 70190 0.66 0.975493
Target:  5'- --aUGgcCGACaacauaGAGCAGCUGcUCCGGg -3'
miRNA:   3'- caaGCaaGCUGg-----CUUGUCGGC-AGGCC- -5'
5722 3' -53.5 NC_001806.1 + 21961 0.66 0.972873
Target:  5'- ------aCGGCCGGGCAGCC--CCGGc -3'
miRNA:   3'- caagcaaGCUGGCUUGUCGGcaGGCC- -5'
5722 3' -53.5 NC_001806.1 + 4059 0.66 0.972873
Target:  5'- -cUCGggCGcCCacACGGCCG-CCGGg -3'
miRNA:   3'- caAGCaaGCuGGcuUGUCGGCaGGCC- -5'
5722 3' -53.5 NC_001806.1 + 86388 0.66 0.972873
Target:  5'- gGggCGcUCGGCUaacgcGGCGGCCGcUCCGGa -3'
miRNA:   3'- -CaaGCaAGCUGGc----UUGUCGGC-AGGCC- -5'
5722 3' -53.5 NC_001806.1 + 134969 0.67 0.967037
Target:  5'- -aUCG-UCGGCCGucgcGGCGGCCaucCCGGu -3'
miRNA:   3'- caAGCaAGCUGGC----UUGUCGGca-GGCC- -5'
5722 3' -53.5 NC_001806.1 + 2061 0.67 0.967037
Target:  5'- --aCGgugUUGACCacGAugAGCCG-CCGGu -3'
miRNA:   3'- caaGCa--AGCUGG--CUugUCGGCaGGCC- -5'
5722 3' -53.5 NC_001806.1 + 20093 0.67 0.967037
Target:  5'- -gUCGUUCGugGCCG-GC-GCCGUCUGcGg -3'
miRNA:   3'- caAGCAAGC--UGGCuUGuCGGCAGGC-C- -5'
5722 3' -53.5 NC_001806.1 + 75205 0.67 0.963808
Target:  5'- --gCG-UCGACgGuggauGCGGCCGUgCGGg -3'
miRNA:   3'- caaGCaAGCUGgCu----UGUCGGCAgGCC- -5'
5722 3' -53.5 NC_001806.1 + 38483 0.67 0.960365
Target:  5'- -gUCGccaUGACCGGGCugucggcuGCCGUCgGGg -3'
miRNA:   3'- caAGCaa-GCUGGCUUGu-------CGGCAGgCC- -5'
5722 3' -53.5 NC_001806.1 + 22173 0.67 0.960365
Target:  5'- -cUCGggCGcCCcGGCGGCCGUgUGGg -3'
miRNA:   3'- caAGCaaGCuGGcUUGUCGGCAgGCC- -5'
5722 3' -53.5 NC_001806.1 + 66812 0.67 0.952814
Target:  5'- ------aCGGCCGAGCggGGCCGgcCCGGg -3'
miRNA:   3'- caagcaaGCUGGCUUG--UCGGCa-GGCC- -5'
5722 3' -53.5 NC_001806.1 + 59996 0.67 0.952814
Target:  5'- -cUCGgg-GACCcgggGGACGGCCGggUCCGGa -3'
miRNA:   3'- caAGCaagCUGG----CUUGUCGGC--AGGCC- -5'
5722 3' -53.5 NC_001806.1 + 79125 0.68 0.948274
Target:  5'- -cUCGcgCGAgcuauccUCGGGCGGCCGUUCGa -3'
miRNA:   3'- caAGCaaGCU-------GGCUUGUCGGCAGGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.