miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5722 3' -53.5 NC_001806.1 + 151328 0.68 0.944352
Target:  5'- --cCGgcUCGGgCGGGgGGCUGUCCGGc -3'
miRNA:   3'- caaGCa-AGCUgGCUUgUCGGCAGGCC- -5'
5722 3' -53.5 NC_001806.1 + 114615 0.68 0.944352
Target:  5'- uUUCG-UCGAuCCGAcagcccgucguGCAGCaCGUCCGc -3'
miRNA:   3'- cAAGCaAGCU-GGCU-----------UGUCG-GCAGGCc -5'
5722 3' -53.5 NC_001806.1 + 89565 0.68 0.944352
Target:  5'- aUUCGcgUCGGCC---CGGCCGgCCGGg -3'
miRNA:   3'- cAAGCa-AGCUGGcuuGUCGGCaGGCC- -5'
5722 3' -53.5 NC_001806.1 + 30034 0.68 0.944352
Target:  5'- --gCGgggCGGCCGAGgGGCCGgaCGGg -3'
miRNA:   3'- caaGCaa-GCUGGCUUgUCGGCagGCC- -5'
5722 3' -53.5 NC_001806.1 + 69715 0.68 0.9393
Target:  5'- aGUUUGagaCGGCCGAGC-GCCGcuuuaguUCCGGu -3'
miRNA:   3'- -CAAGCaa-GCUGGCUUGuCGGC-------AGGCC- -5'
5722 3' -53.5 NC_001806.1 + 34398 0.68 0.9299
Target:  5'- uGggCGgcggUGGCCGGGCcgGGCCGggCCGGg -3'
miRNA:   3'- -CaaGCaa--GCUGGCUUG--UCGGCa-GGCC- -5'
5722 3' -53.5 NC_001806.1 + 109870 0.69 0.919077
Target:  5'- cUUCGUacauaguuggCGACCacGCGGUCGUCUGGg -3'
miRNA:   3'- cAAGCAa---------GCUGGcuUGUCGGCAGGCC- -5'
5722 3' -53.5 NC_001806.1 + 30241 0.69 0.907305
Target:  5'- --cCGUgCGugCGAGC-GCCGccUCCGGg -3'
miRNA:   3'- caaGCAaGCugGCUUGuCGGC--AGGCC- -5'
5722 3' -53.5 NC_001806.1 + 129673 0.69 0.901067
Target:  5'- --cCGggCcGCCGAGCGGCCcgucUCCGGa -3'
miRNA:   3'- caaGCaaGcUGGCUUGUCGGc---AGGCC- -5'
5722 3' -53.5 NC_001806.1 + 2915 0.69 0.891945
Target:  5'- cUUCGggggUCGcgggccgccgccuCCGGGCGGCCGggCCGGg -3'
miRNA:   3'- cAAGCa---AGCu------------GGCUUGUCGGCa-GGCC- -5'
5722 3' -53.5 NC_001806.1 + 22857 0.76 0.593427
Target:  5'- cUUCGacggCGACCuGGCGGCCGUcCCGGg -3'
miRNA:   3'- cAAGCaa--GCUGGcUUGUCGGCA-GGCC- -5'
5722 3' -53.5 NC_001806.1 + 35757 1.12 0.004111
Target:  5'- cGUUCGUUCGACCGAACAGCCGUCCGGg -3'
miRNA:   3'- -CAAGCAAGCUGGCUUGUCGGCAGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.