miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5722 5' -58.2 NC_001806.1 + 3871 0.66 0.841915
Target:  5'- gGCCCGcgccACGcuGCCGGUGAUGAaggagcugcuguugcGCGCGg -3'
miRNA:   3'- gCGGGC----UGC--UGGUCGCUGCU---------------UGCGUu -5'
5722 5' -58.2 NC_001806.1 + 130135 0.66 0.838706
Target:  5'- -uUCCuGCGGCCAGUGGCccGCGCAGu -3'
miRNA:   3'- gcGGGcUGCUGGUCGCUGcuUGCGUU- -5'
5722 5' -58.2 NC_001806.1 + 75554 0.66 0.838706
Target:  5'- aCGCCgaaggGACGGCCGGgGaccacucccccaGCGGGCGCGc -3'
miRNA:   3'- -GCGGg----CUGCUGGUCgC------------UGCUUGCGUu -5'
5722 5' -58.2 NC_001806.1 + 30219 0.66 0.838706
Target:  5'- gCGCCCccgcGCGGCCGuggccccguGCGuGCGAGCGCc- -3'
miRNA:   3'- -GCGGGc---UGCUGGU---------CGC-UGCUUGCGuu -5'
5722 5' -58.2 NC_001806.1 + 46214 0.66 0.8379
Target:  5'- gGCCCccGCGGCCccGGCGGCGGAgaccaccCGCGg -3'
miRNA:   3'- gCGGGc-UGCUGG--UCGCUGCUU-------GCGUu -5'
5722 5' -58.2 NC_001806.1 + 21495 0.66 0.836281
Target:  5'- aCGCcgCCGGCGACCgggccccggcccggGGCcGCGAACGgGAg -3'
miRNA:   3'- -GCG--GGCUGCUGG--------------UCGcUGCUUGCgUU- -5'
5722 5' -58.2 NC_001806.1 + 83253 0.66 0.83384
Target:  5'- gGCCCGcgggGgGGCgGGCGACGGaggggguucgggcggGCGCGGa -3'
miRNA:   3'- gCGGGC----UgCUGgUCGCUGCU---------------UGCGUU- -5'
5722 5' -58.2 NC_001806.1 + 53771 0.66 0.830559
Target:  5'- cCG-CCGACG-CCGuCGACGAGcCGCAGg -3'
miRNA:   3'- -GCgGGCUGCuGGUcGCUGCUU-GCGUU- -5'
5722 5' -58.2 NC_001806.1 + 74232 0.66 0.830559
Target:  5'- uGCCUGucuuCGACCAGCacacGCGGgacaucGCGCAGc -3'
miRNA:   3'- gCGGGCu---GCUGGUCGc---UGCU------UGCGUU- -5'
5722 5' -58.2 NC_001806.1 + 74368 0.66 0.830559
Target:  5'- gGaCCUGGCGGCCuGGCucuccguccuGACGGACGCc- -3'
miRNA:   3'- gC-GGGCUGCUGG-UCG----------CUGCUUGCGuu -5'
5722 5' -58.2 NC_001806.1 + 21788 0.66 0.830559
Target:  5'- aGCgCGGCG-CCGGCagcccccgGGCGGACGCc- -3'
miRNA:   3'- gCGgGCUGCuGGUCG--------CUGCUUGCGuu -5'
5722 5' -58.2 NC_001806.1 + 2407 0.66 0.830559
Target:  5'- cCGCCauGCGGCgCAGCGGgccCGAggcGCGCAGg -3'
miRNA:   3'- -GCGGgcUGCUG-GUCGCU---GCU---UGCGUU- -5'
5722 5' -58.2 NC_001806.1 + 82769 0.66 0.825587
Target:  5'- gGCCCGGCGuacgucaggagggagGCCAGCcgcuGCGucCGCGAc -3'
miRNA:   3'- gCGGGCUGC---------------UGGUCGc---UGCuuGCGUU- -5'
5722 5' -58.2 NC_001806.1 + 20413 0.66 0.822238
Target:  5'- gGCCCgggGACGGCCA---ACGGGCGCGc -3'
miRNA:   3'- gCGGG---CUGCUGGUcgcUGCUUGCGUu -5'
5722 5' -58.2 NC_001806.1 + 105428 0.66 0.822238
Target:  5'- --aCCGACGAUCuGCGACcuGGCGCGc -3'
miRNA:   3'- gcgGGCUGCUGGuCGCUGc-UUGCGUu -5'
5722 5' -58.2 NC_001806.1 + 122874 0.66 0.822238
Target:  5'- cCGCCgCGccACGGCCgagaagAGCGGCGAGugcuCGCAGc -3'
miRNA:   3'- -GCGG-GC--UGCUGG------UCGCUGCUU----GCGUU- -5'
5722 5' -58.2 NC_001806.1 + 147760 0.66 0.822238
Target:  5'- gGuCCCGACG--CGGCcGCGGACGCGGg -3'
miRNA:   3'- gC-GGGCUGCugGUCGcUGCUUGCGUU- -5'
5722 5' -58.2 NC_001806.1 + 40142 0.66 0.822238
Target:  5'- gGcCCCGACGcUCAgcGCGACGAAUGUc- -3'
miRNA:   3'- gC-GGGCUGCuGGU--CGCUGCUUGCGuu -5'
5722 5' -58.2 NC_001806.1 + 4650 0.66 0.822238
Target:  5'- aCGUCuccgCGGCGGCUGGgcCGGCGGGCGCGg -3'
miRNA:   3'- -GCGG----GCUGCUGGUC--GCUGCUUGCGUu -5'
5722 5' -58.2 NC_001806.1 + 73983 0.66 0.822238
Target:  5'- uGCCCGcccCGGCCGG-GGCGGcccCGCAGg -3'
miRNA:   3'- gCGGGCu--GCUGGUCgCUGCUu--GCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.