miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5722 5' -58.2 NC_001806.1 + 114176 0.66 0.813749
Target:  5'- uGCCCcaGCGACCccGUGACGGaccccGCGCAc -3'
miRNA:   3'- gCGGGc-UGCUGGu-CGCUGCU-----UGCGUu -5'
5722 5' -58.2 NC_001806.1 + 95714 0.66 0.813749
Target:  5'- cCGCUCGGCGcCgGGCGuguuCGAcGCGCAc -3'
miRNA:   3'- -GCGGGCUGCuGgUCGCu---GCU-UGCGUu -5'
5722 5' -58.2 NC_001806.1 + 128544 0.66 0.813749
Target:  5'- aGCCagaCGGCGGCCcGCGuccaGGGCGCGGu -3'
miRNA:   3'- gCGG---GCUGCUGGuCGCug--CUUGCGUU- -5'
5722 5' -58.2 NC_001806.1 + 112518 0.66 0.813749
Target:  5'- aG-CCGACGuGCCGGUGACGuACgGCGAg -3'
miRNA:   3'- gCgGGCUGC-UGGUCGCUGCuUG-CGUU- -5'
5722 5' -58.2 NC_001806.1 + 107216 0.66 0.813749
Target:  5'- aGCCCcucggcguACGACgCAGUGGCGcccAGCGCAGc -3'
miRNA:   3'- gCGGGc-------UGCUG-GUCGCUGC---UUGCGUU- -5'
5722 5' -58.2 NC_001806.1 + 131883 0.66 0.813749
Target:  5'- cCGCCCG-CG-CC-GCGACG-ACGCc- -3'
miRNA:   3'- -GCGGGCuGCuGGuCGCUGCuUGCGuu -5'
5722 5' -58.2 NC_001806.1 + 132737 0.66 0.813749
Target:  5'- gGCCCGGCGugGCCucGGCGGCagccGGAUGCc- -3'
miRNA:   3'- gCGGGCUGC--UGG--UCGCUG----CUUGCGuu -5'
5722 5' -58.2 NC_001806.1 + 137510 0.66 0.813749
Target:  5'- uCGCUgGAgGACCugcAGCGACGAgaucugACGUAc -3'
miRNA:   3'- -GCGGgCUgCUGG---UCGCUGCU------UGCGUu -5'
5722 5' -58.2 NC_001806.1 + 109301 0.66 0.8051
Target:  5'- gGCgCCGGCGaaacGCCAGCGGgGcccACGCGGu -3'
miRNA:   3'- gCG-GGCUGC----UGGUCGCUgCu--UGCGUU- -5'
5722 5' -58.2 NC_001806.1 + 116076 0.66 0.8051
Target:  5'- uGCCgCGugGAUCGGCGccaugcugGCGGACGg-- -3'
miRNA:   3'- gCGG-GCugCUGGUCGC--------UGCUUGCguu -5'
5722 5' -58.2 NC_001806.1 + 30587 0.66 0.8051
Target:  5'- uCGCgCCGGCaggGGCCaagagGGCGGCG-ACGCAc -3'
miRNA:   3'- -GCG-GGCUG---CUGG-----UCGCUGCuUGCGUu -5'
5722 5' -58.2 NC_001806.1 + 13035 0.66 0.802476
Target:  5'- -aCCCGGCGAUCuucaagcuguauacGGCGACGGuGCGCu- -3'
miRNA:   3'- gcGGGCUGCUGG--------------UCGCUGCU-UGCGuu -5'
5722 5' -58.2 NC_001806.1 + 125833 0.66 0.802476
Target:  5'- gCGCCUGACGcGCC-GCGggcccccggccgccGCGGACGCc- -3'
miRNA:   3'- -GCGGGCUGC-UGGuCGC--------------UGCUUGCGuu -5'
5722 5' -58.2 NC_001806.1 + 20034 0.67 0.7963
Target:  5'- cCGCuCCGACGGCCcucuGCGACuccCGCu- -3'
miRNA:   3'- -GCG-GGCUGCUGGu---CGCUGcuuGCGuu -5'
5722 5' -58.2 NC_001806.1 + 26980 0.67 0.7963
Target:  5'- gGCUCGugGGCCcGCGAgCGGGC-CGAc -3'
miRNA:   3'- gCGGGCugCUGGuCGCU-GCUUGcGUU- -5'
5722 5' -58.2 NC_001806.1 + 19680 0.67 0.795412
Target:  5'- uCGCCuCGACGAggacguuccuCCuGCGggaaggcACGAACGCGGg -3'
miRNA:   3'- -GCGG-GCUGCU----------GGuCGC-------UGCUUGCGUU- -5'
5722 5' -58.2 NC_001806.1 + 147176 0.67 0.787356
Target:  5'- cCGCCCGAggaGGCggaAGCGGaggaGGACGCGg -3'
miRNA:   3'- -GCGGGCUg--CUGg--UCGCUg---CUUGCGUu -5'
5722 5' -58.2 NC_001806.1 + 104999 0.67 0.787356
Target:  5'- cCGCCUGGCcaaacGCCAGCGccccgGCGAGCGg-- -3'
miRNA:   3'- -GCGGGCUGc----UGGUCGC-----UGCUUGCguu -5'
5722 5' -58.2 NC_001806.1 + 52997 0.67 0.787356
Target:  5'- aCGgCCGACGACgA-CGACGAcgACGCc- -3'
miRNA:   3'- -GCgGGCUGCUGgUcGCUGCU--UGCGuu -5'
5722 5' -58.2 NC_001806.1 + 22178 0.67 0.786454
Target:  5'- gCGcCCCGGCGGCCgugugggcgcccgAGCugGGCGAcgccGCGCAGc -3'
miRNA:   3'- -GC-GGGCUGCUGG-------------UCG--CUGCU----UGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.