miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5723 3' -56.8 NC_001806.1 + 77702 0.66 0.904169
Target:  5'- cCCCCGCuuCCGACGgacaccCugGAGucGGCCUCg -3'
miRNA:   3'- -GGGGUG--GGCUGUa-----GugUUCc-CUGGAG- -5'
5723 3' -56.8 NC_001806.1 + 48966 0.66 0.904169
Target:  5'- gCCCCGucgcuCCCGuccauuccCAUCGCGAGGGGguCCg- -3'
miRNA:   3'- -GGGGU-----GGGCu-------GUAGUGUUCCCU--GGag -5'
5723 3' -56.8 NC_001806.1 + 24696 0.66 0.904169
Target:  5'- gCCCgGCCCGguggcGCGggcCGCgGAGGGACUUUu -3'
miRNA:   3'- -GGGgUGGGC-----UGUa--GUG-UUCCCUGGAG- -5'
5723 3' -56.8 NC_001806.1 + 149297 0.66 0.904169
Target:  5'- uCCCCACCCcccuagaugcguGugAguaaGGGGGGCCUg -3'
miRNA:   3'- -GGGGUGGG------------CugUagugUUCCCUGGAg -5'
5723 3' -56.8 NC_001806.1 + 1629 0.66 0.904169
Target:  5'- gCCCCAgCgcgcgcaggCGGCGU-GCGAGuGGGCCUCc -3'
miRNA:   3'- -GGGGUgG---------GCUGUAgUGUUC-CCUGGAG- -5'
5723 3' -56.8 NC_001806.1 + 50444 0.66 0.897881
Target:  5'- aCCCCGCCUuugcgGACGUggCGCGGGaGGAgCUg -3'
miRNA:   3'- -GGGGUGGG-----CUGUA--GUGUUC-CCUgGAg -5'
5723 3' -56.8 NC_001806.1 + 30978 0.66 0.897881
Target:  5'- gCCCUgucGCCUuacgugaacaaGACuAUCACGGGGGACUg- -3'
miRNA:   3'- -GGGG---UGGG-----------CUG-UAGUGUUCCCUGGag -5'
5723 3' -56.8 NC_001806.1 + 27234 0.66 0.891368
Target:  5'- gCCCGCCC----UCACAGGGcGggccGCCUCg -3'
miRNA:   3'- gGGGUGGGcuguAGUGUUCC-C----UGGAG- -5'
5723 3' -56.8 NC_001806.1 + 114587 0.66 0.884632
Target:  5'- gUCCC-CCCGGC-UCu--GGGGGCCa- -3'
miRNA:   3'- -GGGGuGGGCUGuAGuguUCCCUGGag -5'
5723 3' -56.8 NC_001806.1 + 22398 0.66 0.879787
Target:  5'- gCCCCACCUGGgcuacgcCAUgGCGGccggccgcuucggcuGGGGCCUg -3'
miRNA:   3'- -GGGGUGGGCU-------GUAgUGUU---------------CCCUGGAg -5'
5723 3' -56.8 NC_001806.1 + 55737 0.66 0.877678
Target:  5'- aCCCGggggacCCCGAUGU----GGGGGCCUCg -3'
miRNA:   3'- gGGGU------GGGCUGUAguguUCCCUGGAG- -5'
5723 3' -56.8 NC_001806.1 + 124054 0.66 0.87555
Target:  5'- aCCCCGCCCuACAcuaCACGAcccucgagauccccGGGGCC-Cg -3'
miRNA:   3'- -GGGGUGGGcUGUa--GUGUU--------------CCCUGGaG- -5'
5723 3' -56.8 NC_001806.1 + 37563 0.66 0.870511
Target:  5'- aCCCGucugguCUCGGCGUCA-AAGGGcCCUCc -3'
miRNA:   3'- gGGGU------GGGCUGUAGUgUUCCCuGGAG- -5'
5723 3' -56.8 NC_001806.1 + 89262 0.66 0.870511
Target:  5'- uCCCCGgCUGGCucCGCGAGGG-CCg- -3'
miRNA:   3'- -GGGGUgGGCUGuaGUGUUCCCuGGag -5'
5723 3' -56.8 NC_001806.1 + 77462 0.66 0.870511
Target:  5'- gCCCCACCCGGC--CAaGAGGccGACC-Cg -3'
miRNA:   3'- -GGGGUGGGCUGuaGUgUUCC--CUGGaG- -5'
5723 3' -56.8 NC_001806.1 + 104943 0.66 0.869783
Target:  5'- aCCUUGCCCGGCAcaaACAucguguuGGGGGCCc- -3'
miRNA:   3'- -GGGGUGGGCUGUag-UGU-------UCCCUGGag -5'
5723 3' -56.8 NC_001806.1 + 46130 0.67 0.863135
Target:  5'- uCCgCCACCCGcuGgGUCcgGAGGGGCCg- -3'
miRNA:   3'- -GG-GGUGGGC--UgUAGugUUCCCUGGag -5'
5723 3' -56.8 NC_001806.1 + 137035 0.67 0.863135
Target:  5'- aCCCgGCCCGccGCAccuUCAgCAacccGGGGACCg- -3'
miRNA:   3'- -GGGgUGGGC--UGU---AGU-GU----UCCCUGGag -5'
5723 3' -56.8 NC_001806.1 + 113865 0.67 0.861635
Target:  5'- aCCgCCAUCgCGACugccggguuagCGCGGGGGGCCa- -3'
miRNA:   3'- -GG-GGUGG-GCUGua---------GUGUUCCCUGGag -5'
5723 3' -56.8 NC_001806.1 + 119272 0.67 0.855556
Target:  5'- gCCCUugGCCCGGCcccaCGCGGGGGcGCC-Cg -3'
miRNA:   3'- -GGGG--UGGGCUGua--GUGUUCCC-UGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.