miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5723 5' -55.1 NC_001806.1 + 70467 0.66 0.953728
Target:  5'- gCGACGgGCGCCGccuguaugcGGUg--GUCGGGg -3'
miRNA:   3'- gGCUGCaUGCGGCu--------CCGauaCAGCCU- -5'
5723 5' -55.1 NC_001806.1 + 151440 0.66 0.945459
Target:  5'- aCCGGCGgggggcgGCGgCGGGGCggccgCGGGc -3'
miRNA:   3'- -GGCUGCa------UGCgGCUCCGauacaGCCU- -5'
5723 5' -55.1 NC_001806.1 + 41440 0.66 0.945459
Target:  5'- gUCGGgGUGCGCCGccGCUucggCGGAc -3'
miRNA:   3'- -GGCUgCAUGCGGCucCGAuacaGCCU- -5'
5723 5' -55.1 NC_001806.1 + 25922 0.66 0.940982
Target:  5'- gCGGCGUGCGCgCGcgcGGCgggcGUGggggCGGGg -3'
miRNA:   3'- gGCUGCAUGCG-GCu--CCGa---UACa---GCCU- -5'
5723 5' -55.1 NC_001806.1 + 27028 0.66 0.940982
Target:  5'- gUGGCGgAgGCCGAGGCggucaUCGGGc -3'
miRNA:   3'- gGCUGCaUgCGGCUCCGauac-AGCCU- -5'
5723 5' -55.1 NC_001806.1 + 62311 0.66 0.940982
Target:  5'- gCGGCGggccugGCGCgGAGGggGuuUGUCGGu -3'
miRNA:   3'- gGCUGCa-----UGCGgCUCCgaU--ACAGCCu -5'
5723 5' -55.1 NC_001806.1 + 3298 0.66 0.940982
Target:  5'- gUCGGCGUGCGgCGGcGGCgg-GgaagCGGGg -3'
miRNA:   3'- -GGCUGCAUGCgGCU-CCGauaCa---GCCU- -5'
5723 5' -55.1 NC_001806.1 + 64953 0.66 0.936274
Target:  5'- aCCGGCGUcgGCGCCcGGGCcggggGUccCGGGg -3'
miRNA:   3'- -GGCUGCA--UGCGGcUCCGaua--CA--GCCU- -5'
5723 5' -55.1 NC_001806.1 + 147166 0.67 0.931334
Target:  5'- aCCGACGgcccCGCCcgagGAGGCggaagCGGAg -3'
miRNA:   3'- -GGCUGCau--GCGG----CUCCGauacaGCCU- -5'
5723 5' -55.1 NC_001806.1 + 3487 0.67 0.925631
Target:  5'- cCCGGCGUcgucgucgGCGUCGgcguggcGGGCggcGUCGGGg -3'
miRNA:   3'- -GGCUGCA--------UGCGGC-------UCCGauaCAGCCU- -5'
5723 5' -55.1 NC_001806.1 + 94725 0.67 0.920754
Target:  5'- gCGGCGguaccugccccACGCCGccGGGC--UGUCGGAc -3'
miRNA:   3'- gGCUGCa----------UGCGGC--UCCGauACAGCCU- -5'
5723 5' -55.1 NC_001806.1 + 76884 0.67 0.920754
Target:  5'- cCCGuCGccGCGUCGAGGCccUG-CGGAg -3'
miRNA:   3'- -GGCuGCa-UGCGGCUCCGauACaGCCU- -5'
5723 5' -55.1 NC_001806.1 + 9220 0.67 0.920754
Target:  5'- gUCGACGUG-GCgaGGGGCgggcggucAUGUCGGGg -3'
miRNA:   3'- -GGCUGCAUgCGg-CUCCGa-------UACAGCCU- -5'
5723 5' -55.1 NC_001806.1 + 30514 0.67 0.920201
Target:  5'- gCGGCgGUGCGUCcgaggaaGAGGCgcggGUCGGGc -3'
miRNA:   3'- gGCUG-CAUGCGG-------CUCCGaua-CAGCCU- -5'
5723 5' -55.1 NC_001806.1 + 94762 0.67 0.915114
Target:  5'- gCCGACc-GCGCgCGGGcGCUcuccGUGUUGGAc -3'
miRNA:   3'- -GGCUGcaUGCG-GCUC-CGA----UACAGCCU- -5'
5723 5' -55.1 NC_001806.1 + 129376 0.68 0.883476
Target:  5'- aCGACGUccuCGUucuggaCGAGGUUAUGUCGa- -3'
miRNA:   3'- gGCUGCAu--GCG------GCUCCGAUACAGCcu -5'
5723 5' -55.1 NC_001806.1 + 148083 0.69 0.846424
Target:  5'- cCCGAUGgGCGCCGAGGggGgcgcUGUCcGAg -3'
miRNA:   3'- -GGCUGCaUGCGGCUCCgaU----ACAGcCU- -5'
5723 5' -55.1 NC_001806.1 + 145255 0.7 0.821867
Target:  5'- aCGACaGgggGCGCCccaGAGGCUAagGUCGGc -3'
miRNA:   3'- gGCUG-Ca--UGCGG---CUCCGAUa-CAGCCu -5'
5723 5' -55.1 NC_001806.1 + 107027 0.7 0.821022
Target:  5'- gCCGG-GUugGCCGcccgcggggccgcGGGCUGUGccgCGGAu -3'
miRNA:   3'- -GGCUgCAugCGGC-------------UCCGAUACa--GCCU- -5'
5723 5' -55.1 NC_001806.1 + 14972 0.7 0.813335
Target:  5'- gCGGgGUAUGuuGAGGC---GUCGGAa -3'
miRNA:   3'- gGCUgCAUGCggCUCCGauaCAGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.