miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5724 3' -56.6 NC_001806.1 + 66510 0.66 0.896124
Target:  5'- aACGCgGGGUUUggGGAuuggcggccaggcccGCGagGGGGAAg -3'
miRNA:   3'- -UGCG-CCCAAAuaCCU---------------CGCg-CCCCUUg -5'
5724 3' -56.6 NC_001806.1 + 76398 0.66 0.893492
Target:  5'- uGCGUGGcGgcgcUGGAGCGCGuGGAc- -3'
miRNA:   3'- -UGCGCC-CaaauACCUCGCGCcCCUug -5'
5724 3' -56.6 NC_001806.1 + 52587 0.66 0.893492
Target:  5'- gGCcCGGGg----GGGcaucGCGCGGGGggUg -3'
miRNA:   3'- -UGcGCCCaaauaCCU----CGCGCCCCuuG- -5'
5724 3' -56.6 NC_001806.1 + 44942 0.66 0.88675
Target:  5'- uGCcCGGGgc--UGGcuAGCGCGGGGGc- -3'
miRNA:   3'- -UGcGCCCaaauACC--UCGCGCCCCUug -5'
5724 3' -56.6 NC_001806.1 + 146777 0.66 0.88675
Target:  5'- gACGCGGGggccgUcgGGuacuCGGGGGGCa -3'
miRNA:   3'- -UGCGCCCaa---AuaCCucgcGCCCCUUG- -5'
5724 3' -56.6 NC_001806.1 + 136980 0.66 0.88675
Target:  5'- -aGCGuGGUgcggucAUGGcGGCggccgGCGGGGAGCg -3'
miRNA:   3'- ugCGC-CCAaa----UACC-UCG-----CGCCCCUUG- -5'
5724 3' -56.6 NC_001806.1 + 45333 0.66 0.88675
Target:  5'- gGCGCGauGGgaUcgGGGGCGCGcGGuGCg -3'
miRNA:   3'- -UGCGC--CCaaAuaCCUCGCGCcCCuUG- -5'
5724 3' -56.6 NC_001806.1 + 89775 0.66 0.88675
Target:  5'- cGCGCGGGgc-GUGGgaGGgGCuGGGGcgGACc -3'
miRNA:   3'- -UGCGCCCaaaUACC--UCgCG-CCCC--UUG- -5'
5724 3' -56.6 NC_001806.1 + 100424 0.66 0.879785
Target:  5'- aACG-GGGUUcAUGGGGgGCaguaccGGGGACa -3'
miRNA:   3'- -UGCgCCCAAaUACCUCgCGc-----CCCUUG- -5'
5724 3' -56.6 NC_001806.1 + 50102 0.66 0.872599
Target:  5'- cCGCGGccgugccgUUAcuGAGCGCGGGGGGg -3'
miRNA:   3'- uGCGCCca------AAUacCUCGCGCCCCUUg -5'
5724 3' -56.6 NC_001806.1 + 49483 0.66 0.871869
Target:  5'- cGCGCGGGcuauuuUGGGGCgggucggcgguucGCGGGuGGCg -3'
miRNA:   3'- -UGCGCCCaaau--ACCUCG-------------CGCCCcUUG- -5'
5724 3' -56.6 NC_001806.1 + 93688 0.66 0.868185
Target:  5'- gACGUuggauaugcugugagGGGUUgg-GGGGUG-GGGGAACc -3'
miRNA:   3'- -UGCG---------------CCCAAauaCCUCGCgCCCCUUG- -5'
5724 3' -56.6 NC_001806.1 + 151429 0.66 0.867442
Target:  5'- -gGCGGGggcccaccggcggGGGGCgGCGGcGGGGCg -3'
miRNA:   3'- ugCGCCCaaaua--------CCUCG-CGCC-CCUUG- -5'
5724 3' -56.6 NC_001806.1 + 127198 0.66 0.865199
Target:  5'- uGCGCGGGgUUAcGcGGGCccCGGGGAGa -3'
miRNA:   3'- -UGCGCCCaAAUaC-CUCGc-GCCCCUUg -5'
5724 3' -56.6 NC_001806.1 + 2749 0.67 0.849776
Target:  5'- gGCGCGacacGGccac-GGGGCGCGGGcGGGCc -3'
miRNA:   3'- -UGCGC----CCaaauaCCUCGCGCCC-CUUG- -5'
5724 3' -56.6 NC_001806.1 + 42037 0.67 0.849776
Target:  5'- uCGUGGGUcgucacgGcccgaagaugcgUGGcuaGGCGCGGGGGGCu -3'
miRNA:   3'- uGCGCCCAaa-----U------------ACC---UCGCGCCCCUUG- -5'
5724 3' -56.6 NC_001806.1 + 85963 0.67 0.849776
Target:  5'- uUGCGGGgcu-UGGAcGCGCcucccGGGGggUc -3'
miRNA:   3'- uGCGCCCaaauACCU-CGCG-----CCCCuuG- -5'
5724 3' -56.6 NC_001806.1 + 20400 0.67 0.849776
Target:  5'- -gGCGGGaccggGGGGCcCGGGGAc- -3'
miRNA:   3'- ugCGCCCaaauaCCUCGcGCCCCUug -5'
5724 3' -56.6 NC_001806.1 + 44449 0.67 0.844994
Target:  5'- cCGCGGGcccggcguccgcGUGGAGCauGCGGaGGGAUg -3'
miRNA:   3'- uGCGCCCaaa---------UACCUCG--CGCC-CCUUG- -5'
5724 3' -56.6 NC_001806.1 + 151205 0.67 0.836869
Target:  5'- gGCGCGGcGgaaggcggaaGGGGCGCGaGGGGGg -3'
miRNA:   3'- -UGCGCC-Caaaua-----CCUCGCGC-CCCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.