miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5724 5' -59.9 NC_001806.1 + 87332 0.66 0.757774
Target:  5'- ---gCCCCCGCCCUCCUcGCGuucGUc -3'
miRNA:   3'- acuaGGGGGCGGGGGGA-UGCuauCGa -5'
5724 5' -59.9 NC_001806.1 + 52655 0.66 0.757774
Target:  5'- cGAgCCCCCGCCCCUCcccCGAccucGCc -3'
miRNA:   3'- aCUaGGGGGCGGGGGGau-GCUau--CGa -5'
5724 5' -59.9 NC_001806.1 + 4209 0.66 0.757774
Target:  5'- cGGcUCCCCGCUgacguaCCCgucGCGAUAGCg -3'
miRNA:   3'- aCUaGGGGGCGGg-----GGGa--UGCUAUCGa -5'
5724 5' -59.9 NC_001806.1 + 149620 0.66 0.748385
Target:  5'- gGGUUCCaCGCCCCCUaAC-AUGGCg -3'
miRNA:   3'- aCUAGGGgGCGGGGGGaUGcUAUCGa -5'
5724 5' -59.9 NC_001806.1 + 79627 0.66 0.748385
Target:  5'- ---cCCCCCGCCCCCCcGCcuccucccGCg -3'
miRNA:   3'- acuaGGGGGCGGGGGGaUGcuau----CGa -5'
5724 5' -59.9 NC_001806.1 + 111181 0.66 0.74744
Target:  5'- cGAUCCCCUGCgCacacgggCCCUgGgGAUAGCc -3'
miRNA:   3'- aCUAGGGGGCGgG-------GGGA-UgCUAUCGa -5'
5724 5' -59.9 NC_001806.1 + 5019 0.66 0.729322
Target:  5'- gGGUCguCCCCGCCCUCCUcCGucuccGCg -3'
miRNA:   3'- aCUAG--GGGGCGGGGGGAuGCuau--CGa -5'
5724 5' -59.9 NC_001806.1 + 114576 0.66 0.729322
Target:  5'- aGGUCCCCCugguCCCCCCggcucUGggGGCc -3'
miRNA:   3'- aCUAGGGGGc---GGGGGGau---GCuaUCGa -5'
5724 5' -59.9 NC_001806.1 + 20298 0.66 0.729322
Target:  5'- ----gCCCCGCCCCCUUGgGGcGGUc -3'
miRNA:   3'- acuagGGGGCGGGGGGAUgCUaUCGa -5'
5724 5' -59.9 NC_001806.1 + 22676 0.66 0.719666
Target:  5'- gGAU-CCUCGCCgCCCUGgGGcGGCUg -3'
miRNA:   3'- aCUAgGGGGCGGgGGGAUgCUaUCGA- -5'
5724 5' -59.9 NC_001806.1 + 80200 0.66 0.719666
Target:  5'- -cGUCgCCCCGCCCCCg-ACGucaGGCc -3'
miRNA:   3'- acUAG-GGGGCGGGGGgaUGCua-UCGa -5'
5724 5' -59.9 NC_001806.1 + 145761 0.66 0.719666
Target:  5'- ---aCCCCaCGUCCCCCgGCGGUcucuaagaAGCa -3'
miRNA:   3'- acuaGGGG-GCGGGGGGaUGCUA--------UCGa -5'
5724 5' -59.9 NC_001806.1 + 23438 0.66 0.719666
Target:  5'- cGAgcccgCCCCCGCCCagCCCgcgGCGccccgGGCc -3'
miRNA:   3'- aCUa----GGGGGCGGG--GGGa--UGCua---UCGa -5'
5724 5' -59.9 NC_001806.1 + 133620 0.66 0.719666
Target:  5'- cGAcCCCuuGCCCCCCacugccuuccGCGGcGGCg -3'
miRNA:   3'- aCUaGGGggCGGGGGGa---------UGCUaUCGa -5'
5724 5' -59.9 NC_001806.1 + 84567 0.66 0.719666
Target:  5'- ---cCCCCCGCCaCCCaucccgACGAgcuGCUg -3'
miRNA:   3'- acuaGGGGGCGG-GGGga----UGCUau-CGA- -5'
5724 5' -59.9 NC_001806.1 + 52381 0.66 0.718696
Target:  5'- gGA-CCaCCGCCCCCCUguuccccACGAUgaccgcccccAGCUg -3'
miRNA:   3'- aCUaGGgGGCGGGGGGA-------UGCUA----------UCGA- -5'
5724 5' -59.9 NC_001806.1 + 112910 0.66 0.709938
Target:  5'- gGAUCCCCgCGCCuUCCCgcccCGccAGCUg -3'
miRNA:   3'- aCUAGGGG-GCGG-GGGGau--GCuaUCGA- -5'
5724 5' -59.9 NC_001806.1 + 1267 0.66 0.709938
Target:  5'- ----aCCCCGUCCCCCU-CGAacGCg -3'
miRNA:   3'- acuagGGGGCGGGGGGAuGCUauCGa -5'
5724 5' -59.9 NC_001806.1 + 114146 0.66 0.709938
Target:  5'- gUGGUCCCggagaUCGCCCCCg-GCGAggAGUg -3'
miRNA:   3'- -ACUAGGG-----GGCGGGGGgaUGCUa-UCGa -5'
5724 5' -59.9 NC_001806.1 + 143946 0.66 0.709938
Target:  5'- cGAgcaCCCCCGCCcacgcccccgCCCCUGCcccGGCg -3'
miRNA:   3'- aCUa--GGGGGCGG----------GGGGAUGcuaUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.