miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5726 3' -63.2 NC_001806.1 + 152053 0.66 0.589862
Target:  5'- gCCCGGaccGCCGcccgccuuuuuUGCGCGcGCgcgCGCCCg -3'
miRNA:   3'- aGGGCC---CGGC-----------AUGCGC-CGgaaGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 151513 0.66 0.609094
Target:  5'- aCCUGGGaCUGUGCGguUGGgaCggCGCCCg -3'
miRNA:   3'- aGGGCCC-GGCAUGC--GCCg-GaaGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 150862 0.72 0.280201
Target:  5'- uUCgCCGGGCCGgcucCGCgGGCCaggGCCCg -3'
miRNA:   3'- -AG-GGCCCGGCau--GCG-CCGGaagCGGG- -5'
5726 3' -63.2 NC_001806.1 + 150585 0.72 0.31263
Target:  5'- -aCCGGGaaGUGgGCGGCCcg-GCCCa -3'
miRNA:   3'- agGGCCCggCAUgCGCCGGaagCGGG- -5'
5726 3' -63.2 NC_001806.1 + 149846 0.71 0.347828
Target:  5'- cUCCauggGGGUCGUAUGCGGCUggagggUCGCg- -3'
miRNA:   3'- -AGGg---CCCGGCAUGCGCCGGa-----AGCGgg -5'
5726 3' -63.2 NC_001806.1 + 147655 0.7 0.409805
Target:  5'- gUCCgCGGGgCGg--GCGGCCggcucCGCCCc -3'
miRNA:   3'- -AGG-GCCCgGCaugCGCCGGaa---GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 147305 0.7 0.377963
Target:  5'- gUCCCGGGCCcacCcUGGCCg-CGCCCc -3'
miRNA:   3'- -AGGGCCCGGcauGcGCCGGaaGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 147156 0.67 0.580283
Target:  5'- cUCCCaGGGCac--CGaCGGCCc-CGCCCg -3'
miRNA:   3'- -AGGG-CCCGgcauGC-GCCGGaaGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 146642 0.66 0.589862
Target:  5'- gUCCCGGGUCG-ACGCccCCUgcUC-CCCg -3'
miRNA:   3'- -AGGGCCCGGCaUGCGccGGA--AGcGGG- -5'
5726 3' -63.2 NC_001806.1 + 146538 0.67 0.584111
Target:  5'- cCCCGacacggauuGGCUGguguaguggGCGCGGCCagagaccacccagCGCCCg -3'
miRNA:   3'- aGGGC---------CCGGCa--------UGCGCCGGaa-----------GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 145721 0.66 0.618737
Target:  5'- gCCCaccuGGCCGcgcgggUGCGCGuGCCUUUGCacaCCa -3'
miRNA:   3'- aGGGc---CCGGC------AUGCGC-CGGAAGCG---GG- -5'
5726 3' -63.2 NC_001806.1 + 144571 0.67 0.532995
Target:  5'- uUUCCGGGCgCGUccgggugcCGCGGCUcUCcggGCCCc -3'
miRNA:   3'- -AGGGCCCG-GCAu-------GCGCCGGaAG---CGGG- -5'
5726 3' -63.2 NC_001806.1 + 143545 0.67 0.561231
Target:  5'- gCCCGGcCCGgcccgGCcCGGCCaccgcCGCCCa -3'
miRNA:   3'- aGGGCCcGGCa----UGcGCCGGaa---GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 143453 0.67 0.580283
Target:  5'- cCCCGGGCCGUGuCcuuGCUUUCcCCCc -3'
miRNA:   3'- aGGGCCCGGCAU-GcgcCGGAAGcGGG- -5'
5726 3' -63.2 NC_001806.1 + 143401 0.71 0.347828
Target:  5'- cCCCGgcGGCCGgguCGCGGCuCUUacgagcgGCCCg -3'
miRNA:   3'- aGGGC--CCGGCau-GCGCCG-GAAg------CGGG- -5'
5726 3' -63.2 NC_001806.1 + 141422 0.71 0.331293
Target:  5'- gCCgGGGCgGcGCGCGGCCaaccggcggauaacUcCGCCCa -3'
miRNA:   3'- aGGgCCCGgCaUGCGCCGG--------------AaGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 140008 0.7 0.385766
Target:  5'- cUCCUGGGUCagcuccucGCGCGGCgaaagCGCCCg -3'
miRNA:   3'- -AGGGCCCGGca------UGCGCCGgaa--GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 138677 0.74 0.230764
Target:  5'- gCCCGGGCCuggAUGCGacccagaggacccucGCCUaCGCCCg -3'
miRNA:   3'- aGGGCCCGGca-UGCGC---------------CGGAaGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 138154 0.67 0.551768
Target:  5'- cUCCCcGGCUGgACGCGGCUguucUCcuCCCa -3'
miRNA:   3'- -AGGGcCCGGCaUGCGCCGGa---AGc-GGG- -5'
5726 3' -63.2 NC_001806.1 + 137691 0.67 0.561231
Target:  5'- cCCaCGGGgCGcUGC-CGGCCUUUaCCCg -3'
miRNA:   3'- aGG-GCCCgGC-AUGcGCCGGAAGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.