miRNA display CGI


Results 41 - 60 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5726 3' -63.2 NC_001806.1 + 80013 0.66 0.589862
Target:  5'- uUCCCguaggcGGGCCGca-GCGGCgCcuuacgCGCCCc -3'
miRNA:   3'- -AGGG------CCCGGCaugCGCCG-Gaa----GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 75359 0.66 0.589862
Target:  5'- cCCUGGaCgCGcGgGUGGCCaUCGCCCa -3'
miRNA:   3'- aGGGCCcG-GCaUgCGCCGGaAGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 106241 0.66 0.589862
Target:  5'- uUCCCGGGCCuggGUaACGUuuucGGCCgUCccugaccccgagGCCCu -3'
miRNA:   3'- -AGGGCCCGG---CA-UGCG----CCGGaAG------------CGGG- -5'
5726 3' -63.2 NC_001806.1 + 135803 0.66 0.589862
Target:  5'- gUCCUGGcCCGcagaccCGCGGCUguuucCGCCCu -3'
miRNA:   3'- -AGGGCCcGGCau----GCGCCGGaa---GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 54088 0.66 0.589862
Target:  5'- aCCCaGGCCGcgGCGgGgaGCCga-GCCCg -3'
miRNA:   3'- aGGGcCCGGCa-UGCgC--CGGaagCGGG- -5'
5726 3' -63.2 NC_001806.1 + 146642 0.66 0.589862
Target:  5'- gUCCCGGGUCG-ACGCccCCUgcUC-CCCg -3'
miRNA:   3'- -AGGGCCCGGCaUGCGccGGA--AGcGGG- -5'
5726 3' -63.2 NC_001806.1 + 146538 0.67 0.584111
Target:  5'- cCCCGacacggauuGGCUGguguaguggGCGCGGCCagagaccacccagCGCCCg -3'
miRNA:   3'- aGGGC---------CCGGCa--------UGCGCCGGaa-----------GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 147156 0.67 0.580283
Target:  5'- cUCCCaGGGCac--CGaCGGCCc-CGCCCg -3'
miRNA:   3'- -AGGG-CCCGgcauGC-GCCGGaaGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 112135 0.67 0.580283
Target:  5'- gUCCuCGGGgCGUuugaGCGCGGCa--CGgCCg -3'
miRNA:   3'- -AGG-GCCCgGCA----UGCGCCGgaaGCgGG- -5'
5726 3' -63.2 NC_001806.1 + 143453 0.67 0.580283
Target:  5'- cCCCGGGCCGUGuCcuuGCUUUCcCCCc -3'
miRNA:   3'- aGGGCCCGGCAU-GcgcCGGAAGcGGG- -5'
5726 3' -63.2 NC_001806.1 + 103929 0.67 0.580283
Target:  5'- -gCCGGGUC--ACGCGGCUgacgcggagCGUCCg -3'
miRNA:   3'- agGGCCCGGcaUGCGCCGGaa-------GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 43218 0.67 0.580283
Target:  5'- uUCUCgGGGCUaUAUGUGGCUggggagcgCGCCCc -3'
miRNA:   3'- -AGGG-CCCGGcAUGCGCCGGaa------GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 85510 0.67 0.580283
Target:  5'- gCCCGGG--GUAC-CGGUUcgUCGCCCa -3'
miRNA:   3'- aGGGCCCggCAUGcGCCGGa-AGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 1329 0.67 0.570738
Target:  5'- uUCCCGccGCgGggGCGUGGCCaa-GCCCg -3'
miRNA:   3'- -AGGGCc-CGgCa-UGCGCCGGaagCGGG- -5'
5726 3' -63.2 NC_001806.1 + 23932 0.67 0.570738
Target:  5'- -aCCuGGCCGgcgGCGgGGCCUgggggggcCGCCg -3'
miRNA:   3'- agGGcCCGGCa--UGCgCCGGAa-------GCGGg -5'
5726 3' -63.2 NC_001806.1 + 112318 0.67 0.570738
Target:  5'- uUCCUGGGCaagGCG-GGCCacCGCCg -3'
miRNA:   3'- -AGGGCCCGgcaUGCgCCGGaaGCGGg -5'
5726 3' -63.2 NC_001806.1 + 73705 0.67 0.570738
Target:  5'- aCCUGGaGCUGcagcuucGCGCGGCCc-CGCCg -3'
miRNA:   3'- aGGGCC-CGGCa------UGCGCCGGaaGCGGg -5'
5726 3' -63.2 NC_001806.1 + 4311 0.67 0.570738
Target:  5'- gCCCGuGG-CGU-CGCGGCCggccacCGCCg -3'
miRNA:   3'- aGGGC-CCgGCAuGCGCCGGaa----GCGGg -5'
5726 3' -63.2 NC_001806.1 + 91401 0.67 0.561231
Target:  5'- gCCCGGGuUCGaGgGuCGGCCcaccgCGCCCc -3'
miRNA:   3'- aGGGCCC-GGCaUgC-GCCGGaa---GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 26381 0.67 0.561231
Target:  5'- gCCCGccgccGCCGccauCGCGGCCcccgcCGCCCc -3'
miRNA:   3'- aGGGCc----CGGCau--GCGCCGGaa---GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.