Results 41 - 60 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5727 | 3' | -45.3 | NC_001806.1 | + | 56881 | 0.66 | 0.999994 |
Target: 5'- --------cACCAgAGCGCGcGCuGCCu -3' miRNA: 3'- cuuuuuuuuUGGUgUCGCGUaCG-CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 62641 | 0.67 | 0.999953 |
Target: 5'- --------cACgGgAGCGCcUGCGCCa -3' miRNA: 3'- cuuuuuuuuUGgUgUCGCGuACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 77368 | 0.67 | 0.999916 |
Target: 5'- -----cAAGGCCACaggccagacgGGCGCggGCGCg -3' miRNA: 3'- cuuuuuUUUUGGUG----------UCGCGuaCGCGg -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 42633 | 0.67 | 0.999916 |
Target: 5'- --------cGCCGCGGCGgCGUcGCGUCc -3' miRNA: 3'- cuuuuuuuuUGGUGUCGC-GUA-CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 126132 | 0.67 | 0.999916 |
Target: 5'- ---cGGAcGACgGCGGCgagGCcgGCGCCg -3' miRNA: 3'- cuuuUUUuUUGgUGUCG---CGuaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 21786 | 0.67 | 0.999916 |
Target: 5'- -------cGAgCGCGGCGCcgGCaGCCc -3' miRNA: 3'- cuuuuuuuUUgGUGUCGCGuaCG-CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 107044 | 0.67 | 0.999916 |
Target: 5'- -----cGGGGCCGCGG-GC-UGUGCCg -3' miRNA: 3'- cuuuuuUUUUGGUGUCgCGuACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 28159 | 0.67 | 0.999925 |
Target: 5'- ----uGAGGGCCGCccccAGCGCGaggugaggggccggGCGCCa -3' miRNA: 3'- cuuuuUUUUUGGUG----UCGCGUa-------------CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 30452 | 0.67 | 0.999933 |
Target: 5'- ---------cCCGCGGCGCcgcccccuccgGCGCCg -3' miRNA: 3'- cuuuuuuuuuGGUGUCGCGua---------CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 51389 | 0.67 | 0.999916 |
Target: 5'- --cGGAGGGGCUccuUAGCGCGgccguggGCGCCu -3' miRNA: 3'- cuuUUUUUUUGGu--GUCGCGUa------CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 75558 | 0.67 | 0.999913 |
Target: 5'- cGAAGGGAcgGCCGgggaccacuccccCAGCGgGcGCGCCc -3' miRNA: 3'- -CUUUUUUuuUGGU-------------GUCGCgUaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 24087 | 0.67 | 0.999966 |
Target: 5'- ------uGGGCgCACAGgGCGUGCuGCUg -3' miRNA: 3'- cuuuuuuUUUG-GUGUCgCGUACG-CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 49252 | 0.67 | 0.999953 |
Target: 5'- gGAGGAGAuggcGGGCgACgAGcCGCccGUGCGCCg -3' miRNA: 3'- -CUUUUUU----UUUGgUG-UC-GCG--UACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 128220 | 0.67 | 0.999966 |
Target: 5'- --cAGGGAuACCGCGGCGUcgGcCGUg -3' miRNA: 3'- cuuUUUUUuUGGUGUCGCGuaC-GCGg -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 2524 | 0.67 | 0.999966 |
Target: 5'- cGGGGGcgGGCC-CGGCGCAccGCGCg -3' miRNA: 3'- cUUUUUuuUUGGuGUCGCGUa-CGCGg -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 3006 | 0.67 | 0.999962 |
Target: 5'- -------cGGCCGcCAGCGCgucggcggcguccgGUGCGCUg -3' miRNA: 3'- cuuuuuuuUUGGU-GUCGCG--------------UACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 13254 | 0.67 | 0.999966 |
Target: 5'- ------cGAGCCGCAG-GUAcGUGCCg -3' miRNA: 3'- cuuuuuuUUUGGUGUCgCGUaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 24849 | 0.67 | 0.999966 |
Target: 5'- ------cGGGCCGCAGCGgCAccGUGCUg -3' miRNA: 3'- cuuuuuuUUUGGUGUCGC-GUa-CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 125860 | 0.67 | 0.999889 |
Target: 5'- --------cGCCGCGGaCGCcgugGCGCCc -3' miRNA: 3'- cuuuuuuuuUGGUGUC-GCGua--CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 147483 | 0.67 | 0.999911 |
Target: 5'- cGGAGGGGAGCgggGCGGCGCcggagggggcgGCGCCg -3' miRNA: 3'- cUUUUUUUUUGg--UGUCGCGua---------CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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