miRNA display CGI


Results 41 - 60 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 3' -45.3 NC_001806.1 + 23710 0.71 0.995646
Target:  5'- -------cGAUCGCcGCGCGgUGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGuCGCGU-ACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 56498 0.71 0.995646
Target:  5'- cGAGAAAcaccuGGGGCCACAGCgGCAgGC-CCg -3'
miRNA:   3'- -CUUUUU-----UUUUGGUGUCG-CGUaCGcGG- -5'
5727 3' -45.3 NC_001806.1 + 29959 0.71 0.995646
Target:  5'- ------cGAGCCGCGGCGCcgcgggggGCGUCu -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCGua------CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 88976 0.71 0.994879
Target:  5'- ---------cCCACAgGCGCGaGCGCCg -3'
miRNA:   3'- cuuuuuuuuuGGUGU-CGCGUaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 82945 0.71 0.994879
Target:  5'- -----uGGGACCGCAGCGCGcagucggggauUGUGUCc -3'
miRNA:   3'- cuuuuuUUUUGGUGUCGCGU-----------ACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 65228 0.7 0.998529
Target:  5'- ----cGAAuACCGCAGaGCG-GCGCCg -3'
miRNA:   3'- cuuuuUUUuUGGUGUCgCGUaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 92477 0.7 0.998529
Target:  5'- -----cGAGGCCGCcaaGGCGCggGuCGCCa -3'
miRNA:   3'- cuuuuuUUUUGGUG---UCGCGuaC-GCGG- -5'
5727 3' -45.3 NC_001806.1 + 8722 0.7 0.998721
Target:  5'- cGAGGAGAcAGGCgaucaccaugccgaCGCAGCGgGUGCGUCu -3'
miRNA:   3'- -CUUUUUU-UUUG--------------GUGUCGCgUACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 33373 0.7 0.998796
Target:  5'- ---cGGAGAGCCGCGGCaccCGgacGCGCCc -3'
miRNA:   3'- cuuuUUUUUUGGUGUCGc--GUa--CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 24565 0.7 0.998796
Target:  5'- --------cGCCAUGGCGCccggcGCGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGCGua---CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 40569 0.7 0.998796
Target:  5'- uGAAAaugGAAGcGCCGCGGgucgGCGUGCGCg -3'
miRNA:   3'- -CUUU---UUUUuUGGUGUCg---CGUACGCGg -5'
5727 3' -45.3 NC_001806.1 + 26796 0.7 0.998529
Target:  5'- ---cGGAGcACCugGcGCGCcUGCGCCu -3'
miRNA:   3'- cuuuUUUUuUGGugU-CGCGuACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 71967 0.7 0.998212
Target:  5'- ------uGGGCCGCcGCGCAUGUGUUc -3'
miRNA:   3'- cuuuuuuUUUGGUGuCGCGUACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 121405 0.7 0.998212
Target:  5'- -----cGGAGCCG-GGCGCGugcUGCGCCu -3'
miRNA:   3'- cuuuuuUUUUGGUgUCGCGU---ACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 43293 0.7 0.998212
Target:  5'- cGGAGGcgGAGCCGCGGCuGCAggagGC-CCu -3'
miRNA:   3'- -CUUUUuuUUUGGUGUCG-CGUa---CGcGG- -5'
5727 3' -45.3 NC_001806.1 + 29209 0.7 0.998212
Target:  5'- gGggGGAGcGACgAgGGCGacguGUGCGCCg -3'
miRNA:   3'- -CuuUUUUuUUGgUgUCGCg---UACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 2660 0.7 0.998212
Target:  5'- -----cAGGGCgGCGGcCGCggGCGCCg -3'
miRNA:   3'- cuuuuuUUUUGgUGUC-GCGuaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 113798 0.7 0.99784
Target:  5'- -----cGAGACC-CGGCGC-UGCuGCCa -3'
miRNA:   3'- cuuuuuUUUUGGuGUCGCGuACG-CGG- -5'
5727 3' -45.3 NC_001806.1 + 75673 0.7 0.99784
Target:  5'- aGAGAGAAGAUgGCGGCcCAgcGCGCCc -3'
miRNA:   3'- cUUUUUUUUUGgUGUCGcGUa-CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 1923 0.7 0.99784
Target:  5'- -----cGAGGCCagcaccguGCGGCGCAggucccGCGCCg -3'
miRNA:   3'- cuuuuuUUUUGG--------UGUCGCGUa-----CGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.